pycom11g06590

Cell division control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002119
Physical Location & Seq
Reverse (-)
5080033 .. 5082977
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
ATGGAACCTGAAAGTGAGGTGAAGGAGGCATTGCACGTTTCAACCGTGCCGTCAACTGTTTCGTGCCGGGAAGACGAGCAGAAGAGGGTTTTGGAGTTCTTGAAACAATGCATAGAGCAAGAGAAGGCTGGAAGTTTGTATGTGTGTGGGTGTCCCGGGACCGGAAAATCGCTGTCCATTGAGAAAGTGAAGCAGGCTTTGGTTGATTGGGCAGGAGAGGCTGGGTTTGAGGAACCGGATGTGTTGGCTTTGAATTGTTCTTCTCTAACAAAGACTTCTGATATTTTCGCTAAGATACTTGGTAAAGACCAAACGCCAAAGGAAGTTAAAAGCAAAACCTCATCCCTGCAGCTTCTCCAAAATTTGTACTCTCAAAAGCCTTTGTATTCTAGAAGGAAGATGACGCTGGTAATAGCTGATGAGTTGGACTTCTTAATTACTAAAGACCGGGTGGTGCTTCATGATCTTTTTATGCTCACAACGTACCAATTCTCGAGATGCATACTCATAGGCAAACCTATGGTTATTACTTTTCGGGCATACTCTTATGACCAGATTCTCAGGATTCTTCAACAGAGGTTAATTACACTACCTTACACCGTCTTTCAACCACCAGCATTAGAACTTTGTGCAAGAAAAGTTGCTGCCGCATCTGGAGATATGAGGAAAGCTCTTTGTATTTGCAGGAGTGCCATTGAGATTCTGGAAGCAGAGGTGAAAGAATCTGCTGAGAACTTGAATTCATCATCAGTAGTGGATGCATTCTTTGAGCAGCAGACGGCAACTGCTCCAGCTCCTGTTGTGAAAAAACAGGAGACTGATGTTGTGACAATTGGTCATATGGCTTCTGCTTTGTCAAAGACATTCAAATCACCAGTAGTGGATACCATACAAAGTCTTCCGCAACATCAACAGATTATACTTTGCTCCGCCGTGAGGCTTTTCCATGGGAAAAATAAGGATTCAACTGTAGCACAGCTAAATAAATCTTATATAGACATCTGCAAATCAACATTAATTCCACCGGTCGGAATTTTTGAATTTTCAAGTATGTGCAGAGTGCTAAATGACCAGAAACAAGTTACTTTCTGA

Protein Analysis

364

Amino Acids

40.43

Weight (kDa)

7.9

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 21 - 103 8.3e-06 AAA ATPase domain
AAA_22 PF13401 42 - 161 9.1e-12 AAA domain
Cdc6-ORC-like_ATPase_lid PF22606 181 - 238 2.5e-11 Cdc6/ORC-like, ATPase lid domain
AAA_lid_10 PF17872 204 - 237 3.5e-06 AAA lid domain
WHD_Cdc6 PF09079 295 - 360 8.3e-13 CDC6, C terminal winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 648, 902, 930
AcsI RAATTY 4 cut(s) 361, 739, 1032, 1040
AfaI GTAC 2 cut(s) 368, 485
AfiI CCNNNNNNNGG 3 cut(s) 161, 936, 1028
AgeI ACCGGT 1 cut(s) 1024
AhdI GACNNNNNGTC 1 cut(s) 834
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 182, 214
AluBI AGCT 5 cut(s) 352, 416, 671, 794, 979
AluI AGCT 5 cut(s) 352, 416, 671, 794, 979
Alw26I GTCTC 1 cut(s) 809
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 2 cut(s) 155, 493
ApeKI GCWGC 3 cut(s) 349, 644, 772
ApoI RAATTY 4 cut(s) 361, 739, 1032, 1040
AseI ATTAAT 1 cut(s) 1016
AsiGI ACCGGT 1 cut(s) 1024
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 4 cut(s) 68, 156, 157, 449
AsuHPI GGTGA 3 cut(s) 31, 727, 864
AvaI CYCGRG 2 cut(s) 155, 493
AvaII GGWCC 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 78, 890
BbvI GCAGC 3 cut(s) 361, 631, 784
BceAI ACGGC 3 cut(s) 34, 795, 917
BciVI GTATCC 1 cut(s) 877
BcnI CCSGG 4 cut(s) 68, 156, 157, 449
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 2 cut(s) 347, 969
BfuI GTATCC 1 cut(s) 877
BisI GCNGC 4 cut(s) 350, 645, 648, 773
BlsI GCNGC 4 cut(s) 351, 646, 649, 774
Bme1390I CCNGG 4 cut(s) 68, 156, 157, 449
Bme18I GGWCC 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 834
BmeT110I CYCGRG 2 cut(s) 155, 493
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 6, 160, 234
BmrFI CCNGG 4 cut(s) 68, 156, 157, 449
BmsI GCATC 3 cut(s) 488, 659, 748
BpiI GAAGAC 2 cut(s) 78, 890
BplI GAGNNNNNCTC 2 cut(s) 655, 687
BpmI CTGGAG 2 cut(s) 675, 774
BpuMI CCSGG 4 cut(s) 68, 156, 157, 449
BsaJI CCNNGG 2 cut(s) 155, 946
BsaWI WCCGGW 3 cut(s) 161, 235, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 936, 1028
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 1 cut(s) 875
Bse3DI GCAATG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 155, 946
BseGI GGATG 3 cut(s) 244, 341, 763
BseLI CCNNNNNNNGG 3 cut(s) 161, 936, 1028
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 574, 720
BseNI ACTGG 1 cut(s) 875
BseXI GCAGC 3 cut(s) 361, 631, 784
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 1029
BshTI ACCGGT 1 cut(s) 1024
BsiEI CGRYCG 1 cut(s) 1029
BsiHKCI CYCGRG 2 cut(s) 155, 493
BsiSI CCGG 6 cut(s) 67, 156, 162, 236, 448, 1025
BslFI GGGAC 2 cut(s) 138, 172
BslI CCNNNNNNNGG 3 cut(s) 161, 936, 1028
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 2 cut(s) 138, 172
BsmI GAATGC 1 cut(s) 761
BsoBI CYCGRG 2 cut(s) 155, 493
Bsp143I GATC 1 cut(s) 463
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 3 cut(s) 648, 902, 930
BspCNI CTCAG 2 cut(s) 573, 721
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 6, 160, 234
BspMAI CTGCAG 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 1 cut(s) 875
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 155, 946
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 946
Bst4CI ACNGT 4 cut(s) 46, 58, 601, 970
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 291, 560, 729
BstDSI CCRYGG 1 cut(s) 946
BstF5I GGATG 3 cut(s) 244, 341, 763
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 1 cut(s) 463
BstMCI CGRYCG 1 cut(s) 1029
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 66, 154, 155, 447
BstSFI CTRYAG 2 cut(s) 347, 969
BstV1I GCAGC 3 cut(s) 361, 631, 784
BstV2I GAAGAC 2 cut(s) 78, 890
BsuI GTATCC 1 cut(s) 877
BtgI CCRYGG 1 cut(s) 946
BtsCI GGATG 3 cut(s) 244, 341, 763
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 1 cut(s) 159
Cfr9I CCCGGG 1 cut(s) 155
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 367, 484
CspAI ACCGGT 1 cut(s) 1024
CviAII CATG 2 cut(s) 461, 947
CviQI GTAC 2 cut(s) 367, 484
DdeI CTNAG 3 cut(s) 291, 560, 729
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
DriI GACNNNNNGTC 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 919
Eco130I CCWWGG 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 159
Eco88I CYCGRG 2 cut(s) 155, 493
EcoRI GAATTC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 946
EcoT22I ATGCAT 3 cut(s) 113, 503, 763
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 2 cut(s) 464, 950
FaqI GGGAC 2 cut(s) 138, 172
FatI CATG 2 cut(s) 460, 946
FauNDI CATATG 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 350, 645, 648, 773
FokI GGATG 3 cut(s) 251, 328, 770
Fsp4HI GCNGC 4 cut(s) 350, 645, 648, 773
FspBI CTAG 1 cut(s) 390
GluI GCNGC 4 cut(s) 350, 645, 648, 773
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 675, 774
HapII CCGG 6 cut(s) 67, 156, 162, 236, 448, 1025
HgaI GACGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 464, 950
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 5 cut(s) 556, 565, 700, 722, 962
HpaII CCGG 6 cut(s) 67, 156, 162, 236, 448, 1025
HphI GGTGA 3 cut(s) 31, 727, 864
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 280, 1031, 1091
Hpy188III TCNNGA 8 cut(s) 100, 390, 461, 493, 495, 562, 654, 704
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 16, 118, 387
HpyCH4III ACNGT 4 cut(s) 46, 58, 601, 970
HpyCH4IV ACGT 2 cut(s) 36, 482
HpyCH4V TGCA 9 cut(s) 34, 111, 349, 501, 632, 684, 761, 1005, 1056
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 291, 560, 729
HpySE526I ACGT 2 cut(s) 36, 482
Hsp92II CATG 2 cut(s) 464, 950
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 3 cut(s) 793, 799, 932
Lsp1109I GCAGC 3 cut(s) 361, 631, 784
LweI GCATC 3 cut(s) 488, 659, 748
MaeI CTAG 1 cut(s) 390
MaeII ACGT 2 cut(s) 36, 482
MaeIII GTNAC 2 cut(s) 826, 1081
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 6 cut(s) 83, 94, 252, 409, 560, 890
MfeI CAATTG 1 cut(s) 831
MmeI TCCRAC 2 cut(s) 405, 1009
Mph1103I ATGCAT 3 cut(s) 113, 503, 763
MseI TTAA 4 cut(s) 327, 434, 581, 1016
MspI CCGG 6 cut(s) 67, 156, 162, 236, 448, 1025
MspR9I CCNGG 4 cut(s) 68, 156, 157, 449
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 761
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 4 cut(s) 68, 156, 157, 449
NcoI CCATGG 1 cut(s) 946
NdeI CATATG 1 cut(s) 840
NdeII GATC 1 cut(s) 463
NlaIII CATG 2 cut(s) 464, 950
NlaIV GGNNCC 3 cut(s) 6, 160, 234
NmuCI GTSAC 1 cut(s) 826
NsiI ATGCAT 3 cut(s) 113, 503, 763
PaeR7I CTCGAG 1 cut(s) 493
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 761
PfeI GAWTC 5 cut(s) 556, 565, 700, 722, 962
PinAI ACCGGT 1 cut(s) 1024
PkrI GCNGC 4 cut(s) 351, 646, 649, 774
PshBI ATTAAT 1 cut(s) 1016
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 6, 160, 234
PspPI GGNCC 1 cut(s) 159
PstI CTGCAG 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 797
RsaI GTAC 2 cut(s) 368, 485
RsaNI GTAC 2 cut(s) 367, 484
SaqAI TTAA 4 cut(s) 327, 434, 581, 1016
SatI GCNGC 4 cut(s) 350, 645, 648, 773
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 68, 156, 157, 449
SfaNI GCATC 3 cut(s) 488, 659, 748
SfcI CTRYAG 2 cut(s) 347, 969
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 493
SmaI CCCGGG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
SsiI CCGC 3 cut(s) 648, 902, 930
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 4 cut(s) 66, 154, 155, 447
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 4 cut(s) 46, 58, 601, 970
TaiI ACGT 2 cut(s) 39, 485
TaqI TCGA 1 cut(s) 494
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 5 cut(s) 556, 565, 700, 722, 962
Tru1I TTAA 4 cut(s) 327, 434, 581, 1016
Tru9I TTAA 4 cut(s) 327, 434, 581, 1016
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 3 cut(s) 349, 644, 772
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 2 cut(s) 449, 732
TspMI CCCGGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 159
VspI ATTAAT 1 cut(s) 1016
XapI RAATTY 4 cut(s) 361, 739, 1032, 1040
XbaI TCTAGA 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 493
XmaI CCCGGG 1 cut(s) 155
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 3 cut(s) 113, 503, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.