Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

5569049 .. 5570052

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAATACAGGGTTGAGTTGTTCAACAAGCTCACCCATACATGTTTCAACAAGTGCGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGATGTGTCTCAAAATACTGGCATGTGACTAATCTAGTCGGACAGCTGCTAGGTACTGGTCGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

63

Amino Acids

7.27

Weight (kDa)

8.41

Isoelectric Point (pI)

18.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	3 - 54	5.8e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	71, 169
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	25, 49
AluBI	AGCT	3 cut(s)	31, 85, 160
AluI	AGCT	3 cut(s)	31, 85, 160
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	25, 107
BbvI	GCAGC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	149, 164
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	137, 175
BseCI	ATCGAT	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	137, 175
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	137, 175
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	45, 140
BstV1I	GCAGC	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	70, 168
CviAII	CATG	2 cut(s)	42, 137
CviJI	RGCY	4 cut(s)	31, 85, 160, 178
CviKI_1	RGCY	4 cut(s)	31, 85, 160, 178
CviQI	GTAC	2 cut(s)	70, 168
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
FaeI	CATG	2 cut(s)	45, 140
FaiI	YATR	5 cut(s)	39, 43, 92, 138, 185
FatI	CATG	2 cut(s)	41, 136
Fnu4HI	GCNGC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	2 cut(s)	149, 164
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	45, 140
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	2 cut(s)	25, 107
Hpy188I	TCNGA	2 cut(s)	82, 155
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	45, 140
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	2 cut(s)	118, 156
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	149, 164
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	160
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	45, 140
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	2 cut(s)	45, 140
PciI	ACATGT	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	71, 169
RsaNI	GTAC	2 cut(s)	70, 168
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	86
SetI	ASST	4 cut(s)	33, 87, 162, 169
SspMI	CTAG	2 cut(s)	149, 164
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	115
TatI	WGTACW	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	139
XceI	RCATGY	2 cut(s)	45, 140
XspI	CTAG	2 cut(s)	149, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.