Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

1142146 .. 1143944

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGCGTGGAAGTATATCACAACCTTAAGTCTGTGATTAAAAAGAAGTACGGTCAGGATGCAACCAATGTTGGTGACGAAGGTGGATTTGCTCCTAACATCCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAGGCTGGATACACCGGCAAAGTTGTCATTGGAATGGATGTTGCTGCATCTGAGTTTTATGGATCAGATAAAACCTATGATCTGAACTTCAAGGAAGAGAAAAATGATGGTTCCCAAAAGATCTCAGGAAATGCTCTAAAGGACCTCTACAAGTCATTTGCAAGTGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAACACTATGCCAAGATGACAGCTGAAGTTGGAGAAAAAGTACAAATTGTGGGAGATGATCTGTTGGTCACCAACCCCAAGAGGGTTGAGAAGGCAATCAAGGAGAAATCTTGCAATGCTCTTCTTCTCAAGGTGAATCAAATTGGATCCGTAACTGAGAGCATTGAGGCTGTAAGAATGTCCAAGAAAGCTGGATGGGGTGTGATGGCCAGCCACCGAAGTGGAGAAACCGAGGATACCTTCATTGCTGATCTCTCCGTGGGTTTGGCCACGGGACAAATCAAGACAGGAGCTCCCTGTAGGTCGGAGCGTCTAGCCAAGTACAACCAGCTCTTGCGAATTGAGGAGGAGCTCGGTTCAGAGGCAGTGTATGCTGGAGCCAAGTTCCGCGTGCCCGTTGAGCCCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

257

Amino Acids

28.13

Weight (kDa)

5.15

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	750
AciI	CCGC	1 cut(s)	748
AclWI	GGATC	4 cut(s)	217, 332, 501, 514
AcoI	YGGCCR	2 cut(s)	567, 627
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	4 cut(s)	50, 317, 402, 683
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	125, 238, 330, 335
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	5 cut(s)	383, 551, 653, 691, 712
AluI	AGCT	5 cut(s)	383, 551, 653, 691, 712
Alw21I	GWGCWC	2 cut(s)	655, 714
AlwI	GGATC	4 cut(s)	217, 332, 501, 514
AoxI	GGCC	2 cut(s)	567, 627
ApeKI	GCWGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	86, 421, 505
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	756
BalI	TGGCCA	2 cut(s)	569, 629
BamHI	GGATCC	1 cut(s)	506
BanII	GRGCYC	3 cut(s)	655, 714, 765
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
Bbv12I	GWGCWC	2 cut(s)	655, 714
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	248, 549, 559
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	2 cut(s)	149, 589
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	26
BfuI	GTATCC	2 cut(s)	149, 589
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	3 cut(s)	259, 508, 739
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	49, 203
BmuI	ACTGGG	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	116, 473
BsaJI	CCNNGG	3 cut(s)	591, 618, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	2 cut(s)	481, 603
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	591, 618, 630
BseGI	GGATG	4 cut(s)	64, 99, 190, 560
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	2 cut(s)	481, 603
BseMII	CTCAG	3 cut(s)	189, 285, 507
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	719, 722
BseSI	GKGCMC	1 cut(s)	756
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	569, 629
BsiHKAI	GWGCWC	2 cut(s)	655, 714
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	569, 629
Bsp1286I	GDGCHC	4 cut(s)	655, 714, 756, 765
Bsp143I	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
BspACI	CCGC	1 cut(s)	748
BspANI	GGCC	2 cut(s)	569, 629
BspCNI	CTCAG	3 cut(s)	190, 284, 508
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	3 cut(s)	259, 508, 739
BspPI	GGATC	4 cut(s)	217, 332, 501, 514
BspQI	GCTCTTC	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	481, 603
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	591, 618, 630
BssMI	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	237, 486
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	571, 752
BstDEI	CTNAG	3 cut(s)	198, 271, 516
BstDSI	CCRYGG	2 cut(s)	618, 630
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	4 cut(s)	64, 99, 190, 560
BstFNI	CGCG	1 cut(s)	750
BstKTI	GATC	7 cut(s)	212, 229, 270, 340, 421, 509, 613
BstMBI	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	731, 760
BstNI	CCWGG	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	658
BstSLI	GKGCMC	1 cut(s)	756
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	3 cut(s)	267, 337, 506
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstYI	RGATCY	3 cut(s)	267, 337, 506
BsuI	GTATCC	2 cut(s)	149, 589
BsuRI	GGCC	2 cut(s)	569, 629
BtgI	CCRYGG	2 cut(s)	618, 630
BtsCI	GGATG	4 cut(s)	64, 99, 190, 560
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	2 cut(s)	571, 752
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	4 cut(s)	49, 316, 401, 682
CviQI	GTAC	4 cut(s)	49, 316, 401, 682
DdeI	CTNAG	3 cut(s)	198, 271, 516
DpnI	GATC	7 cut(s)	211, 228, 269, 339, 420, 508, 612
DpnII	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
EaeI	YGGCCR	2 cut(s)	567, 627
Eam1104I	CTCTTC	2 cut(s)	237, 486
EarI	CTCTTC	2 cut(s)	237, 486
Ecl136II	GAGCTC	2 cut(s)	653, 712
Eco24I	GRGCYC	3 cut(s)	655, 714, 765
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	2 cut(s)	653, 712
Eco57I	CTGAAG	1 cut(s)	405
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	2 cut(s)	653, 712
EcoO109I	RGGNCCY	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	3 cut(s)	655, 714, 765
FaiI	YATR	5 cut(s)	16, 207, 225, 369, 732
FaqI	GGGAC	1 cut(s)	648
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	4 cut(s)	71, 86, 197, 567
FriOI	GRGCYC	3 cut(s)	655, 714, 765
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	2 cut(s)	569, 629
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	659
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	86, 421, 505
Hpy188I	TCNGA	5 cut(s)	199, 214, 231, 667, 721
Hpy188III	TCNNGA	5 cut(s)	56, 122, 133, 273, 643
HpyAV	CCTTC	5 cut(s)	74, 110, 142, 445, 610
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	62, 194, 308, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	731, 760
HpyF3I	CTNAG	3 cut(s)	198, 271, 516
Kzo9I	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	6 cut(s)	97, 650, 658, 667, 709, 737
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	49, 203
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	74, 427, 511
MalI	GATC	7 cut(s)	211, 228, 269, 339, 420, 508, 612
MboI	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
MboII	GAAGA	4 cut(s)	254, 347, 473, 476
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	3 cut(s)	267, 337, 506
MhlI	GDGCHC	4 cut(s)	655, 714, 756, 765
MlsI	TGGCCA	2 cut(s)	569, 629
MluCI	AATT	5 cut(s)	125, 330, 405, 501, 699
MluNI	TGGCCA	2 cut(s)	569, 629
MmeI	TCCRAC	2 cut(s)	370, 645
MnlI	CCTC	7 cut(s)	302, 435, 520, 586, 697, 700, 715
Mox20I	TGGCCA	2 cut(s)	569, 629
MscI	TGGCCA	2 cut(s)	569, 629
MseI	TTAA	2 cut(s)	27, 39
MslI	CAYNNNNRTG	2 cut(s)	179, 579
Msp20I	TGGCCA	2 cut(s)	569, 629
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	731, 760
NdeII	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
NlaIV	GGNNCC	3 cut(s)	259, 508, 739
NmuCI	GTSAC	2 cut(s)	74, 427
OliI	CACNNNNGTG	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	289
Psp124BI	GAGCTC	2 cut(s)	655, 714
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	259, 508, 739
PspPI	GGNCC	1 cut(s)	289
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	3 cut(s)	267, 337, 506
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	4 cut(s)	50, 317, 402, 683
RsaNI	GTAC	4 cut(s)	49, 316, 401, 682
RseI	CAYNNNNRTG	2 cut(s)	179, 579
SacI	GAGCTC	2 cut(s)	655, 714
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	27, 39
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	7 cut(s)	209, 226, 267, 337, 418, 506, 610
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	4 cut(s)	655, 714, 756, 765
SfaNI	GCATC	2 cut(s)	49, 203
SfcI	CTRYAG	1 cut(s)	658
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	179, 579
SmlI	CTYRAG	3 cut(s)	26, 131, 488
SmoI	CTYRAG	3 cut(s)	26, 131, 488
Sse9I	AATT	5 cut(s)	125, 330, 405, 501, 699
SsiI	CCGC	1 cut(s)	748
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	2 cut(s)	655, 714
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	53
TasI	AATT	5 cut(s)	125, 330, 405, 501, 699
TatI	WGTACW	2 cut(s)	400, 681
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	27, 39
Tru9I	TTAA	2 cut(s)	27, 39
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	2 cut(s)	74, 427
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	2 cut(s)	74, 427
TspDTI	ATGAA	1 cut(s)	592
TspGWI	ACGGA	2 cut(s)	499, 607
TspRI	CASTG	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	289
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.