Rorug01G0388400

phosphopyruvate hydratase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
49977281 .. 49979012
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0388400.1

Sequence Viewer

Length: 1440 bp
ATGGTTGATTTGGATTGGAAAGCAAAAATGGTCTCCTCAGATATACCCAGCAAATCCCCCAGGCTCTCCAACAAGCTCCACCACCTCTCCATCCCCGGCTCCTTCCGCGCCGCCCAAATCCAGTCCGACATTTCCCCCGCCTCCGAGCAGGCCTGCTCCACCTACGAGCACTACCTCCGCCTCCCCGAGCTCCGCAAGCTCTGGTGCTCCACCGACTTCCCCGCCTGGAAAAGCGAGTCCATTCTCAAGCCCGCTCTCCAGGCTCTCGAGATCTCTTTCCGGTTCGTCTCCACCGTCCTCTCCGACCCGAGGCCCTACGCCAACCGGAGAGAGTGGCGGCGCCGCCTCGAGTCGCTTATTACTAGTCAGGTTGAGCTCATCGCTTTGTTGATCGAGGACGATGAGGAGGACAGCGAGACGCGCGGAGCGGCGCCGATCGTTGATCTGAGCACGTCCGGCGGCGCGTTGGCTCGCAACGGGAGCTTGGCCGAGGTGTGGAGGGGCTCCGGCCAGAGCACGGTGGTCAGCCGGACCAGCGAGGCCAGCCTGCTGCCGCGGCTCTCCGCGTGGCAGAAGTCGGAGTCGATGGCGCAGAAGATCCTGTACTCGATCGAGTGCGAGATGCGGAGCTGTCCTTACACTCTTGGACTCGGCGAGCCGAACCTCGCCGGAAAACCGAACCTGGATTACGACGCCGTTTGCAAGCCGTCGGAGCTGCATTTGCTAAAGAGGAGCCCGTACGATAGCCACATCGACAACCTAGAGAACCAGGCGGTGTACACCACGCACCAGGTCCTGGAGTCGTGGGTGTTCGCCTGCCACGAGCTCCTGAAGCGCGTGAACCGCCGCGTCGAGTCCAGCGACTTCGAAAAGGCCGCCACCGACTGTTACCTGATCGAGCGCGTCTGGAAGCTTCTGGCGGAAATCGAGGACCTCCACCTGTTAATGGACCCGGAGGACTTTCTCCGGCTCAAGAACCAGTTAAAGATCAAGACGGTGGACGATACGGAGTCGTTTTGCTTCAGGTCGAAGGGACTGGTGGAGATCACCAGGCTCTGTAAGGACTTGAAGCACAAGGTTCCGAACGTGCTGGGAGTGGAGGTGGACCCGATGGGCGGGCCGAGGATCCAGGAGGCGGCGATGAGGCTCTACTCGGAGAAAACCGGGTCGGAGAAGATCCATCTCCTTCAGGCGATGCAGACTGTAGAATCGGCGGTGAAACGTTTCTTCTTCGCGTACAAGCAGGTGCTGGTGGTGTTGATGGGGAGCTTGGAGGCGAAAGGGAACCGGGTCGTGGTGAGCCCGGAGTCCGGCGACGCGCTGAGTCAGATATTCCTGGAGCCGACGTATTTTCCGAGCTTGGACGCCGCGAAGACGTTTCTGGGGGACGGTTTGAGTCACGAAATCGTTTCGGAGAGACGGACGCGGAGGACTAGGTAG

Protein Analysis

479

Amino Acids

54.13

Weight (kDa)

6.31

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hs1pro-1_N PF07231 1 - 205 7.9e-83 Hs1pro-1 N-terminus
Hs1pro-1_C PF07014 208 - 463 1.3e-133 Hs1pro-1 protein C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1234
Acc36I ACCTGC 1 cut(s) 1234
AccB1I GGYRCC 2 cut(s) 339, 430
AccB7I CCANNNNNTGG 1 cut(s) 796
AccBSI CCGCTC 2 cut(s) 254, 428
AclI AACGTT 1 cut(s) 1222
AclWI GGATC 4 cut(s) 592, 1120, 1133, 1171
AcoI YGGCCR 2 cut(s) 486, 508
AcuI CTGAAG 3 cut(s) 851, 1006, 1172
AcyI GRCGYC 4 cut(s) 340, 431, 693, 1365
AfaI GTAC 4 cut(s) 605, 740, 779, 1238
AfiI CCNNNNNNNGG 9 cut(s) 309, 495, 517, 796, 946, 1115, 1135, 1294, 1310
AgsI TTSAA 1 cut(s) 1069
AhlI ACTAGT 1 cut(s) 362
AjiI CACGTC 1 cut(s) 453
Alw21I GWGCWC 7 cut(s) 171, 192, 209, 378, 452, 518, 828
Alw26I GTCTC 4 cut(s) 37, 292, 410, 1411
AlwI GGATC 4 cut(s) 592, 1120, 1133, 1171
AlwNI CAGNNNCTG 3 cut(s) 796, 1056, 1249
Ama87I CYCGRG 4 cut(s) 185, 266, 307, 347
AoxI GGCC 7 cut(s) 150, 311, 486, 508, 540, 873, 1118
ApeKI GCWGC 2 cut(s) 550, 715
Asp700I GAANNNNTTC 1 cut(s) 1223
AspLEI GCGC 9 cut(s) 110, 342, 423, 433, 464, 592, 837, 903, 1321
AspS9I GGNCC 7 cut(s) 312, 531, 793, 931, 949, 1105, 1118
AsuC2I CCSGG 5 cut(s) 96, 953, 1165, 1289, 1304
AsuHPI GGTGA 3 cut(s) 1039, 1228, 1309
AsuII TTCGAA 1 cut(s) 867
AvaI CYCGRG 4 cut(s) 185, 266, 307, 347
AvaII GGWCC 5 cut(s) 531, 793, 931, 949, 1105
BamHI GGATCC 1 cut(s) 1125
BanI GGYRCC 2 cut(s) 339, 430
BanII GRGCYC 6 cut(s) 192, 378, 506, 737, 828, 1304
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BauI CACGAG 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 1379
Bbv12I GWGCWC 7 cut(s) 171, 192, 209, 378, 452, 518, 828
BbvI GCAGC 2 cut(s) 537, 702
BccI CCATC 5 cut(s) 98, 580, 1105, 1188, 1255
BceAI ACGGC 2 cut(s) 680, 691
BcnI CCSGG 5 cut(s) 96, 953, 1165, 1289, 1304
BcoDI GTCTC 4 cut(s) 37, 292, 410, 1411
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 363, 761, 1434
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 2 cut(s) 343, 434
BfuAI ACCTGC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 270
Bme18I GGWCC 5 cut(s) 531, 793, 931, 949, 1105
BmeT110I CYCGRG 4 cut(s) 185, 266, 307, 347
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 7 cut(s) 312, 531, 793, 931, 949, 1105, 1118
BmsI GCATC 2 cut(s) 612, 1185
BpiI GAAGAC 1 cut(s) 1379
BpmI CTGGAG 3 cut(s) 242, 818, 1358
Bpu14I TTCGAA 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 230, 956
BpuMI CCSGG 5 cut(s) 96, 953, 1165, 1289, 1304
BsaHI GRCGYC 4 cut(s) 340, 431, 693, 1365
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 6 cut(s) 59, 94, 308, 489, 554, 1121
BsaWI WCCGGW 2 cut(s) 279, 324
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 1086, 1116, 1331, 1361
Bsc4I CCNNNNNNNGG 9 cut(s) 309, 495, 517, 796, 946, 1115, 1135, 1294, 1310
Bse1I ACTGG 3 cut(s) 121, 979, 1041
BseDI CCNNGG 6 cut(s) 59, 94, 308, 489, 554, 1121
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 9 cut(s) 309, 495, 517, 796, 946, 1115, 1135, 1294, 1310
BseMII CTCAG 3 cut(s) 51, 437, 1313
BseNI ACTGG 3 cut(s) 121, 979, 1041
BseRI GAGGAG 3 cut(s) 25, 419, 745
BseXI GCAGC 2 cut(s) 537, 702
BseYI CCCAGC 2 cut(s) 47, 1090
Bsh1285I CGRYCG 2 cut(s) 438, 612
BshFI GGCC 7 cut(s) 152, 313, 488, 510, 542, 875, 1120
BshNI GGYRCC 2 cut(s) 339, 430
BsiEI CGRYCG 2 cut(s) 438, 612
BsiHKAI GWGCWC 7 cut(s) 171, 192, 209, 378, 452, 518, 828
BsiHKCI CYCGRG 4 cut(s) 185, 266, 307, 347
BsiWI CGTACG 1 cut(s) 738
BslFI GGGAC 2 cut(s) 1047, 1400
BslI CCNNNNNNNGG 9 cut(s) 309, 495, 517, 796, 946, 1115, 1135, 1294, 1310
BsmAI GTCTC 4 cut(s) 37, 292, 410, 1411
BsmBI CGTCTC 3 cut(s) 292, 410, 1411
BsmFI GGGAC 2 cut(s) 1047, 1400
BsnI GGCC 7 cut(s) 152, 313, 488, 510, 542, 875, 1120
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 4 cut(s) 185, 266, 307, 347
Bsp119I TTCGAA 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 777
BspANI GGCC 7 cut(s) 152, 313, 488, 510, 542, 875, 1120
BspCNI CTCAG 3 cut(s) 50, 438, 1314
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 4 cut(s) 592, 1120, 1133, 1171
BspT104I TTCGAA 1 cut(s) 867
BspT107I GGYRCC 2 cut(s) 339, 430
BspTNI GGTCTC 1 cut(s) 37
BsrBI CCGCTC 2 cut(s) 254, 428
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 3 cut(s) 121, 979, 1041
BssECI CCNNGG 6 cut(s) 59, 94, 308, 489, 554, 1121
BssNI GRCGYC 4 cut(s) 340, 431, 693, 1365
BssSI CACGAG 1 cut(s) 821
Bst2BI CACGAG 1 cut(s) 821
Bst4CI ACNGT 6 cut(s) 295, 520, 887, 997, 1204, 1391
BstACI GRCGYC 4 cut(s) 340, 431, 693, 1365
BstAUI TGTACA 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 867
BstDEI CTNAG 3 cut(s) 37, 446, 1322
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 2 cut(s) 343, 434
BstHHI GCGC 9 cut(s) 110, 342, 423, 433, 464, 592, 837, 903, 1321
BstMAI GTCTC 4 cut(s) 37, 292, 410, 1411
BstMCI CGRYCG 2 cut(s) 438, 612
BstSFI CTRYAG 1 cut(s) 1203
BstV1I GCAGC 2 cut(s) 537, 702
BstV2I GAAGAC 1 cut(s) 1379
BstX2I RGATCY 4 cut(s) 270, 597, 1125, 1176
BstYI RGATCY 4 cut(s) 270, 597, 1125, 1176
BsuRI GGCC 7 cut(s) 152, 313, 488, 510, 542, 875, 1120
BtgI CCRYGG 1 cut(s) 554
BtgZI GCGATG 3 cut(s) 364, 1154, 1208
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 1234
CaiI CAGNNNCTG 3 cut(s) 796, 1056, 1249
CfoI GCGC 9 cut(s) 110, 342, 423, 433, 464, 592, 837, 903, 1321
Cfr13I GGNCC 7 cut(s) 312, 531, 793, 931, 949, 1105, 1118
Cfr42I CCGCGG 1 cut(s) 557
CseI GACGC 7 cut(s) 427, 701, 838, 892, 1325, 1373, 1432
CsiI ACCWGGT 1 cut(s) 789
Csp6I GTAC 4 cut(s) 604, 739, 778, 1237
CviQI GTAC 4 cut(s) 604, 739, 778, 1237
DdeI CTNAG 3 cut(s) 37, 446, 1322
DinI GGCGCC 2 cut(s) 341, 432
EaeI YGGCCR 2 cut(s) 486, 508
EciI GGCGGA 2 cut(s) 167, 935
Ecl136II GAGCTC 3 cut(s) 190, 376, 826
Eco147I AGGCCT 1 cut(s) 152
Eco24I GRGCYC 6 cut(s) 192, 378, 506, 737, 828, 1304
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 5 cut(s) 531, 793, 931, 949, 1105
Eco53kI GAGCTC 3 cut(s) 190, 376, 826
Eco57I CTGAAG 3 cut(s) 851, 1006, 1172
Eco88I CYCGRG 4 cut(s) 185, 266, 307, 347
EcoICRI GAGCTC 3 cut(s) 190, 376, 826
EcoO109I RGGNCCY 3 cut(s) 312, 793, 931
EcoT38I GRGCYC 6 cut(s) 192, 378, 506, 737, 828, 1304
EgeI GGCGCC 2 cut(s) 341, 432
EheI GGCGCC 2 cut(s) 341, 432
Esp3I CGTCTC 3 cut(s) 292, 410, 1411
FaiI YATR 1 cut(s) 44
FaqI GGGAC 2 cut(s) 1047, 1400
FauI CCCGC 4 cut(s) 145, 229, 259, 1109
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 6 cut(s) 192, 378, 506, 737, 828, 1304
FspBI CTAG 3 cut(s) 363, 761, 1434
GlaI GCGC 9 cut(s) 109, 341, 422, 432, 463, 591, 836, 902, 1320
GsaI CCCAGC 2 cut(s) 51, 1094
GsuI CTGGAG 3 cut(s) 242, 818, 1358
HaeII RGCGCY 2 cut(s) 343, 434
HaeIII GGCC 7 cut(s) 152, 313, 488, 510, 542, 875, 1120
HgaI GACGC 7 cut(s) 427, 701, 838, 892, 1325, 1373, 1432
HhaI GCGC 9 cut(s) 110, 342, 423, 433, 464, 592, 837, 903, 1321
Hin1I GRCGYC 4 cut(s) 340, 431, 693, 1365
Hin6I GCGC 9 cut(s) 108, 340, 421, 431, 462, 590, 835, 901, 1319
HinP1I GCGC 9 cut(s) 108, 340, 421, 431, 462, 590, 835, 901, 1319
HindIII AAGCTT 1 cut(s) 911
HphI GGTGA 3 cut(s) 1039, 1228, 1309
Hpy166II GTNNAC 5 cut(s) 778, 780, 841, 1000, 1105
Hpy188III TCNNGA 7 cut(s) 266, 268, 829, 907, 973, 991, 1400
Hpy8I GTNNAC 5 cut(s) 778, 780, 841, 1000, 1105
Hpy99I CGWCG 5 cut(s) 695, 712, 854, 1319, 1348
HpyAV CCTTC 3 cut(s) 112, 1024, 1196
HpyCH4III ACNGT 6 cut(s) 295, 520, 887, 997, 1204, 1391
HpyCH4IV ACGT 5 cut(s) 452, 1086, 1222, 1346, 1376
HpyCH4V TGCA 3 cut(s) 702, 718, 1198
HpyF3I CTNAG 3 cut(s) 37, 446, 1322
HpySE526I ACGT 5 cut(s) 452, 1086, 1222, 1346, 1376
Hsp92I GRCGYC 4 cut(s) 340, 431, 693, 1365
HspAI GCGC 9 cut(s) 108, 340, 421, 431, 462, 590, 835, 901, 1319
KasI GGCGCC 2 cut(s) 339, 430
KspI CCGCGG 1 cut(s) 557
Lsp1109I GCAGC 2 cut(s) 537, 702
LweI GCATC 2 cut(s) 612, 1185
MabI ACCWGGT 1 cut(s) 789
MaeI CTAG 3 cut(s) 363, 761, 1434
MaeII ACGT 5 cut(s) 452, 1086, 1222, 1346, 1376
MaeIII GTNAC 2 cut(s) 887, 1397
MbiI CCGCTC 2 cut(s) 254, 428
MboII GAAGA 5 cut(s) 607, 1186, 1219, 1222, 1384
MflI RGATCY 4 cut(s) 270, 597, 1125, 1176
Mly113I GGCGCC 2 cut(s) 340, 431
MmeI TCCRAC 6 cut(s) 93, 150, 327, 558, 690, 1149
MroXI GAANNNNTTC 1 cut(s) 1223
MseI TTAA 2 cut(s) 944, 983
MspA1I CMGCKG 1 cut(s) 556
NarI GGCGCC 2 cut(s) 340, 431
NciI CCSGG 5 cut(s) 96, 953, 1165, 1289, 1304
NmeAIII GCCGAG 3 cut(s) 514, 630, 1146
NmuCI GTSAC 1 cut(s) 1397
NspV TTCGAA 1 cut(s) 867
PaeR7I CTCGAG 2 cut(s) 266, 347
PaqCI CACCTGC 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 152
PcsI WCGNNNNNNNCGW 4 cut(s) 291, 819, 858, 1352
PdmI GAANNNNTTC 1 cut(s) 1223
PfeI GAWTC 1 cut(s) 1208
Pfl23II CGTACG 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 796
PfoI TCCNGGA 3 cut(s) 795, 1128, 1335
Ple19I CGATCG 2 cut(s) 438, 612
PluTI GGCGCC 2 cut(s) 343, 434
PpuMI RGGWCCY 2 cut(s) 793, 931
Psp124BI GAGCTC 3 cut(s) 192, 378, 828
Psp1406I AACGTT 1 cut(s) 1222
Psp5II RGGWCCY 2 cut(s) 793, 931
PspFI CCCAGC 2 cut(s) 47, 1090
PspLI CGTACG 1 cut(s) 738
PspPI GGNCC 7 cut(s) 312, 531, 793, 931, 949, 1105, 1118
PspPPI RGGWCCY 2 cut(s) 793, 931
PspXI VCTCGAGB 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstNI CAGNNNCTG 3 cut(s) 796, 1056, 1249
PsuI RGATCY 4 cut(s) 270, 597, 1125, 1176
PvuI CGATCG 2 cut(s) 438, 612
RsaI GTAC 4 cut(s) 605, 740, 779, 1238
RsaNI GTAC 4 cut(s) 604, 739, 778, 1237
SacI GAGCTC 3 cut(s) 192, 378, 828
SacII CCGCGG 1 cut(s) 557
SaqAI TTAA 2 cut(s) 944, 983
Sau96I GGNCC 7 cut(s) 312, 531, 793, 931, 949, 1105, 1118
SexAI ACCWGGT 1 cut(s) 789
SfaNI GCATC 2 cut(s) 612, 1185
SfcI CTRYAG 1 cut(s) 1203
SfoI GGCGCC 2 cut(s) 341, 432
Sfr274I CTCGAG 2 cut(s) 266, 347
Sfr303I CCGCGG 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 867
SgrBI CCGCGG 1 cut(s) 557
SinI GGWCC 5 cut(s) 531, 793, 931, 949, 1105
SlaI CTCGAG 2 cut(s) 266, 347
SmlI CTYRAG 4 cut(s) 245, 266, 347, 971
SmoI CTYRAG 4 cut(s) 245, 266, 347, 971
SpeI ACTAGT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 152
SspDI GGCGCC 2 cut(s) 339, 430
SspMI CTAG 3 cut(s) 363, 761, 1434
SstI GAGCTC 3 cut(s) 192, 378, 828
StuI AGGCCT 1 cut(s) 152
TaaI ACNGT 6 cut(s) 295, 520, 887, 997, 1204, 1391
TaiI ACGT 5 cut(s) 455, 1089, 1225, 1349, 1379
TatI WGTACW 2 cut(s) 603, 777
TfiI GAWTC 1 cut(s) 1208
Tru1I TTAA 2 cut(s) 944, 983
Tru9I TTAA 2 cut(s) 944, 983
TseFI GTSAC 1 cut(s) 1397
TseI GCWGC 2 cut(s) 550, 715
Tsp45I GTSAC 1 cut(s) 1397
TspGWI ACGGA 2 cut(s) 1022, 1435
Van91I CCANNNNNTGG 1 cut(s) 796
VpaK11BI GGWCC 5 cut(s) 531, 793, 931, 949, 1105
XhoI CTCGAG 2 cut(s) 266, 347
XmnI GAANNNNTTC 1 cut(s) 1223
XspI CTAG 3 cut(s) 363, 761, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.