Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Reverse (-)

9826908 .. 9827558

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTGAAGCCCAAAGTTCCTGCGCCTGTGGCAGCGGTAGTTCGCTGTTCTTCTCACTCATAAGCATCTTTTTCATCTGGGTCATCGTCCTTCCCCGAAACCCTAAAATCACAATCACTGATGCCCTTCTCACCCAGTTCAGTTTCACCAACACCACCACCAACAGCACCCTCTACTACAACCTTGCCTTCAACCTCACCATCAGAAATCCCAACAAAAGGCTCGGCATCAGCTACCGTCGCATCCGAGTCATTGGTAACTACCAAAAGAAGAGGTTTGCCCTCGTGACTTTGCCTAATACTACAGTACCGTTTTACCAAGGCCACAAGAACACCACCTTTTTGAGTGACATAATTGTTCAAGGGCAGCAGGTGGTGAAGTTTGGGAAAAAGGAGATTTCCGAGTTTAACAAGGAGACTGCCGCTGGTATTTACAGTATTGATGCAGTGCTCGCTCTTCGGGTGAAGCTCAGGTTGGGCACGATAAAGTTTCACAACTATGGCCCGGAAAATATCCACTGCAAGCTGAAACTTCCTTTAAGTACTAGAAATAGTACTTTAAATCAAACATCCGTGAGTAGCAGTTTCAATGTTACAAATTGTGGGCATGTTTCTGTGGTTACTGGTTTTTTCTTGTCTTGGTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

216

Amino Acids

24.2

Weight (kDa)

10.02

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
AciI	CCGC	2 cut(s)	36, 423
AfaI	GTAC	3 cut(s)	309, 544, 556
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	193, 362, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	3 cut(s)	234, 469, 526
AluI	AGCT	3 cut(s)	234, 469, 526
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	322, 502
ApeKI	GCWGC	2 cut(s)	33, 367
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	6 cut(s)	17, 124, 139, 190, 388, 475
BaeGI	GKGCMC	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	45, 379
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	34, 368, 423
BlsI	GCNGC	3 cut(s)	35, 369, 424
BmcAI	AGTACT	2 cut(s)	544, 556
Bme1390I	CCNGG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	5 cut(s)	75, 112, 237, 252, 433
BmuI	ACTGGG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	136, 628
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	243, 569
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	2 cut(s)	136, 628
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	45, 379
BshFI	GGCC	2 cut(s)	324, 504
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	324, 504
Bsp1286I	GDGCHC	2 cut(s)	453, 482
BspACI	CCGC	2 cut(s)	36, 423
BspANI	GGCC	2 cut(s)	324, 504
BspCNI	CTCAG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	647
BspMI	ACCTGC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	136, 628
BssECI	CCNNGG	1 cut(s)	319
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	4 cut(s)	239, 307, 312, 437
Bst6I	CTCTTC	2 cut(s)	266, 462
BstC8I	GCNNGC	2 cut(s)	453, 524
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	2 cut(s)	243, 569
BstHHI	GCGC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 240, 452
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	45, 379
BsuRI	GGCC	2 cut(s)	324, 504
BtsCI	GGATG	2 cut(s)	243, 569
BtsI	GCAGTG	2 cut(s)	453, 517
BtsIMutI	CAGTG	3 cut(s)	117, 453, 517
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	453, 524
CciI	TCATGA	1 cut(s)	647
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	308, 543, 555
CviAII	CATG	2 cut(s)	608, 648
CviJI	RGCY	7 cut(s)	11, 223, 234, 324, 469, 504, 526
CviKI_1	RGCY	7 cut(s)	11, 223, 234, 324, 469, 504, 526
CviQI	GTAC	3 cut(s)	308, 543, 555
DdeI	CTNAG	1 cut(s)	470
DraI	TTTAAA	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	266, 462
EarI	CTCTTC	2 cut(s)	266, 462
Eco130I	CCWWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	611, 651
FaiI	YATR	5 cut(s)	62, 353, 501, 609, 649
FatI	CATG	2 cut(s)	607, 647
Fnu4HI	GCNGC	3 cut(s)	34, 368, 423
FokI	GGATG	2 cut(s)	230, 556
Fsp4HI	GCNGC	3 cut(s)	34, 368, 423
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	34, 368, 423
HaeIII	GGCC	2 cut(s)	324, 504
HapII	CCGG	1 cut(s)	506
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	611, 651
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	6 cut(s)	17, 124, 139, 190, 388, 475
Hpy188I	TCNGA	3 cut(s)	206, 248, 403
Hpy188III	TCNNGA	2 cut(s)	286, 648
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	101, 137, 199
HpyCH4III	ACNGT	4 cut(s)	239, 307, 312, 437
HpyCH4V	TGCA	2 cut(s)	446, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 240, 452
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	611, 651
HspAI	GCGC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	462
LpnPI	CCDG	9 cut(s)	34, 40, 64, 149, 356, 411, 457, 519, 609
Lsp1109I	GCAGC	2 cut(s)	45, 379
LweI	GCATC	5 cut(s)	75, 112, 237, 252, 433
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	5 cut(s)	257, 286, 347, 592, 619
MboII	GAAGA	3 cut(s)	43, 283, 449
MhlI	GDGCHC	2 cut(s)	453, 482
MluCI	AATT	2 cut(s)	354, 598
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	182, 206, 267, 293
MseI	TTAA	3 cut(s)	408, 539, 560
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	2 cut(s)	36, 425
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	30, 240, 452
NciI	CCSGG	1 cut(s)	506
NlaIII	CATG	2 cut(s)	611, 651
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	286, 347
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	647
PaqCI	CACCTGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	35, 369, 424
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	503
RsaI	GTAC	3 cut(s)	309, 544, 556
RsaNI	GTAC	3 cut(s)	308, 543, 555
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	408, 539, 560
SatI	GCNGC	3 cut(s)	34, 368, 423
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	2 cut(s)	544, 556
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	453, 482
SetI	ASST	9 cut(s)	186, 198, 236, 278, 341, 375, 471, 476, 528
SfaNI	GCATC	5 cut(s)	75, 112, 237, 252, 433
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	2 cut(s)	354, 598
SsiI	CCGC	2 cut(s)	36, 423
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	4 cut(s)	239, 307, 312, 437
TasI	AATT	2 cut(s)	354, 598
TatI	WGTACW	2 cut(s)	542, 554
TauI	GCSGC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	408, 539, 560
Tru9I	TTAA	3 cut(s)	408, 539, 560
TscAI	CASTG	3 cut(s)	124, 453, 524
TseFI	GTSAC	2 cut(s)	286, 347
TseI	GCWGC	2 cut(s)	33, 367
Tsp45I	GTSAC	2 cut(s)	286, 347
TspDTI	ATGAA	2 cut(s)	64, 636
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	3 cut(s)	124, 453, 524
XceI	RCATGY	1 cut(s)	611
XspI	CTAG	1 cut(s)	546
ZrmI	AGTACT	2 cut(s)	544, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.