Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

7259166 .. 7261028

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATGTTGCTGCATTTGAGTTTTATGGAACAGATAAAACATATGACCTGACTTTCAAGGAAGAGAAAACTGTTGGTTCCCGGAAGATTTCTGGAAATGCTCTCGAGGACGTCTACAAGTCATTTGTGACTGAGTATCCTATTGTCTCAATTGAAGACTCCTTTGACCAAGATGATTGGGAGCCCTACTCTAAGACGACATTTGAAATGGGAGAGAAAGTACAAAACTTTGAAGGAGCTATTTCTACATTGAGGCCTAAAAGTGATCTCCAAGCCAATACCAACTTCCAAAGGCTCAAAAGATCCTATGAGGTTCTCAAGAATGAAAGTTCCCGCAAAGTGTTCGACAAAATGCTAAGAGATCAAAGACAGAAAGATGGGAACCATTCGGAGCACGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

148

Amino Acids

17.21

Weight (kDa)

5.22

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_C	PF00113	1 - 75	2.3e-22	Enolase, C-terminal TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	297, 392
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	5 cut(s)	58, 155, 206, 233, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	297, 392
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	2 cut(s)	371, 409
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	79, 183, 383
BmrFI	CCNGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	186, 396
Bsp143I	GATC	5 cut(s)	265, 302, 361, 397, 424
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	79, 183, 383
BspPI	GGATC	2 cut(s)	297, 392
BssMI	GATC	5 cut(s)	265, 302, 361, 397, 424
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	132, 192, 356
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	268, 305, 364, 400, 427
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	5 cut(s)	265, 302, 361, 397, 424
BstSCI	CCNGG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	221
CviJI	RGCY	5 cut(s)	184, 239, 256, 275, 295
CviKI_1	RGCY	5 cut(s)	184, 239, 256, 275, 295
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	132, 192, 356
DpnI	GATC	5 cut(s)	267, 304, 363, 399, 426
DpnII	GATC	5 cut(s)	265, 302, 361, 397, 424
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	186
FaiI	YATR	4 cut(s)	27, 43, 45, 309
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	391, 424
Hpy188III	TCNNGA	4 cut(s)	93, 104, 319, 428
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	132, 192, 356
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	265, 302, 361, 397, 424
LmnI	GCTCC	3 cut(s)	181, 236, 391
LpnPI	CCDG	3 cut(s)	62, 78, 95
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	267, 304, 363, 399, 426
MboI	GATC	5 cut(s)	265, 302, 361, 397, 424
MboII	GAAGA	4 cut(s)	74, 97, 167, 424
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	186, 396
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	100, 246, 304
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	5 cut(s)	265, 302, 361, 397, 424
NlaIV	GGNNCC	3 cut(s)	79, 183, 383
NmuCI	GTSAC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	79, 183, 383
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	265, 302, 361, 397, 424
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	186, 396
SetI	ASST	4 cut(s)	51, 114, 241, 315
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	104, 317
SmoI	CTYRAG	2 cut(s)	104, 317
Sse9I	AATT	1 cut(s)	150
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	334
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	105, 345
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.