Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

16689531 .. 16694367

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG189800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTACGATCCAGTCAGTTAAGGCGAGGCAGATCTTCGACAGCCGTGGCAATCCCACCGTCGAGGTCGATATAGTACTTTCAGATGGTTTTTTGGCTAGAGCTGCTGTTCCCAGTGGTGCCTCTACCGGTGTGTACGAGGCTCTTGAGCTGCGTGATGGAGGCAAAGAGTACCTTGGAAAGGGTGTGTCGAAGGCTGTCAACAATGTCAACTCAATCATCGGCCCCGCTTTGATCGGCAAGGACCCATCTGAGCAGACTGCCATTGATAACTTTATGGTTCAGCAGCTCGATGGAACTGTTAATGAGTGGGGTTGGTGCAAACAAAAGCTTGGTGCAAATGCCATATTGGCCGTGTCTCTTGCAGTCTGCAAAGCTGGGGCTAGTGTTAAGAAAATTCCTCTTTACAAGCACATTGCCAATCTTGCTGGCAACAAGAACTTGGTGTTACCTGTTCCTGCTTTCAATGTCATCAATGGAGGATCACATGCAGGAAACAAACTTGCCATGCAGGAGTTCATGATTCTTCCTGTTGGAGCTTCCTCATTCAAAGAGGCCATGAAGATGGGTGTGGAAGTATATCATAATCTAAAGTCTGTGATTAAAAAGAAATATGGTCAGGATGCAACCAATGTCGGTGACGAAGGTGGATTTGCTCCCAACATTCAGGAGAACAAGGAAGGTCTTGAATTGCTTAAGACTGCCATTGAGAAGGCTGGTTACACTGGAAAGGTTGTCATTGGAATGGATGTTGCTGCATCCGAGTTTTATGGAACAGATAAAACCTATGACTTGAACTTCAAGGAAGAGAAAAATGATGGTTCCTCGAAGATTTCCGGAAATGCTCTCAAGGATCTCTACAAGTCATTTGCGTCCGAGTACCCTATTGTCTCAATTGAAGATCCCTTTGACCAAGATGATTGGGAGCACTACTCCAAGATGACAGCTGAATGTGGAGAGCAAGTACAAATTGTTGGAGATGATCTATTGGTCACCAACCCCAAGGTCCGTAAAGATAGTCAATTCATTCTGTTGATCCTCTTACATGTTATATTTTCCTTCGAGTTTTCTTTTTTCAAAACAATAGCAACGTTTTCAAACAGATGGAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

371

Amino Acids

40.3

Weight (kDa)

5.69

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_N	PF03952	4 - 139	2.7e-53	Enolase, N-terminal domain
Enolase_C	PF00113	148 - 338	2e-95	Enolase, C-terminal TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	836
AciI	CCGC	1 cut(s)	228
AclI	AACGTT	1 cut(s)	1091
AclWI	GGATC	5 cut(s)	4, 490, 861, 896, 1030
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	5 cut(s)	78, 137, 173, 881, 966
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflII	CTTAAG	1 cut(s)	695
AflIII	ACRYGT	1 cut(s)	1045
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	8 cut(s)	466, 550, 689, 796, 802, 899, 1078, 1098
AluBI	AGCT	7 cut(s)	104, 151, 289, 331, 377, 539, 947
AluI	AGCT	7 cut(s)	104, 151, 289, 331, 377, 539, 947
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	2 cut(s)	363, 895
AlwI	GGATC	5 cut(s)	4, 490, 861, 896, 1030
Aor13HI	TCCGGA	1 cut(s)	836
AoxI	GGCC	3 cut(s)	223, 351, 555
ApeKI	GCWGC	4 cut(s)	104, 151, 286, 755
ApoI	RAATTY	1 cut(s)	396
AsiGI	ACCGGT	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	224, 244, 1006
AsuHPI	GGTGA	2 cut(s)	650, 985
AvaII	GGWCC	2 cut(s)	244, 1006
BanI	GGYRCC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	91, 138, 298, 742
BccI	CCATC	7 cut(s)	80, 152, 256, 287, 559, 812, 1098
BceAI	ACGGC	2 cut(s)	30, 338
BcoDI	GTCTC	2 cut(s)	363, 895
BfaI	CTAG	2 cut(s)	99, 384
BfrI	CTTAAG	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	4 cut(s)	105, 152, 287, 756
BlsI	GCNGC	4 cut(s)	106, 153, 288, 757
BmcAI	AGTACT	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	244, 1006
BmgT120I	GGNCC	3 cut(s)	224, 244, 1006
BmiI	GGNNCC	4 cut(s)	121, 226, 246, 823
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	613, 767
BmuI	ACTGGG	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	917, 949
BpuEI	CTTGAG	2 cut(s)	167, 833
BsaJI	CCNNGG	3 cut(s)	46, 175, 1002
BsaWI	WCCGGW	2 cut(s)	128, 836
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	13, 114, 730
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	836
BseDI	CCNNGG	3 cut(s)	46, 175, 1002
BseGI	GGATG	3 cut(s)	628, 754, 758
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	13, 114, 730
BseXI	GCAGC	4 cut(s)	91, 138, 298, 742
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	3 cut(s)	225, 353, 557
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	129, 837
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	363, 895
BsnI	GGCC	3 cut(s)	225, 353, 557
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp13I	TCCGGA	1 cut(s)	836
Bsp143I	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	225, 353, 557
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	836
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	121, 226, 246, 823
BspPI	GGATC	5 cut(s)	4, 490, 861, 896, 1030
BspT107I	GGYRCC	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	13, 114, 730
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	46, 175, 1002
BssMI	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
BssT1I	CCWWGG	2 cut(s)	175, 1002
Bst4CI	ACNGT	2 cut(s)	61, 301
Bst6I	CTCTTC	1 cut(s)	801
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	991
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	628, 754, 758
BstKTI	GATC	8 cut(s)	12, 36, 237, 485, 856, 904, 985, 1038
BstMAI	GTCTC	2 cut(s)	363, 895
BstMBI	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 350, 425
BstNSI	RCATGY	2 cut(s)	491, 1049
BstPI	GGTNACC	1 cut(s)	991
BstV1I	GCAGC	4 cut(s)	91, 138, 298, 742
BstX2I	RGATCY	3 cut(s)	33, 853, 901
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	3 cut(s)	33, 853, 901
BsuRI	GGCC	3 cut(s)	225, 353, 557
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	3 cut(s)	628, 754, 758
BtsIMutI	CAGTG	2 cut(s)	121, 723
Cac8I	GCNNGC	1 cut(s)	430
CciI	TCATGA	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	224, 244, 1006
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	5 cut(s)	77, 136, 172, 880, 965
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	5 cut(s)	488, 508, 520, 559, 1046
CviQI	GTAC	5 cut(s)	77, 136, 172, 880, 965
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	8 cut(s)	11, 35, 236, 484, 855, 903, 984, 1037
DpnII	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco130I	CCWWGG	2 cut(s)	175, 1002
Eco47I	GGWCC	2 cut(s)	244, 1006
Eco91I	GGTNACC	1 cut(s)	991
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	991
EcoT14I	CCWWGG	2 cut(s)	175, 1002
ErhI	CCWWGG	2 cut(s)	175, 1002
FaeI	CATG	5 cut(s)	491, 511, 523, 562, 1049
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	5 cut(s)	487, 507, 519, 558, 1045
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	105, 152, 287, 756
FokI	GGATG	3 cut(s)	635, 745, 761
Fsp4HI	GCNGC	4 cut(s)	105, 152, 287, 756
FspBI	CTAG	2 cut(s)	99, 384
GluI	GCNGC	4 cut(s)	105, 152, 287, 756
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	225, 353, 557
HapII	CCGG	2 cut(s)	129, 837
HgaI	GACGC	1 cut(s)	861
Hin1II	CATG	5 cut(s)	491, 511, 523, 562, 1049
HincII	GTYRAC	2 cut(s)	202, 211
HindII	GTYRAC	2 cut(s)	202, 211
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	129, 837
HphI	GGTGA	2 cut(s)	650, 985
Hpy166II	GTNNAC	3 cut(s)	136, 202, 211
Hpy188I	TCNGA	4 cut(s)	85, 253, 763, 877
Hpy188III	TCNNGA	6 cut(s)	146, 520, 620, 668, 686, 837
Hpy8I	GTNNAC	3 cut(s)	136, 202, 211
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	5 cut(s)	187, 638, 674, 706, 1069
HpyCH4III	ACNGT	2 cut(s)	61, 301
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	8 cut(s)	321, 338, 365, 372, 491, 511, 626, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 350, 425
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	5 cut(s)	491, 511, 523, 562, 1049
Kpn2I	TCCGGA	1 cut(s)	836
Kzo9I	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
LmnI	GCTCC	4 cut(s)	536, 661, 925, 1107
Lsp1109I	GCAGC	4 cut(s)	91, 138, 298, 742
LweI	GCATC	2 cut(s)	613, 767
MaeI	CTAG	2 cut(s)	99, 384
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	4 cut(s)	447, 638, 719, 991
MalI	GATC	8 cut(s)	11, 35, 236, 484, 855, 903, 984, 1037
MboI	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
MboII	GAAGA	6 cut(s)	28, 518, 574, 818, 841, 911
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	3 cut(s)	33, 853, 901
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	5 cut(s)	396, 689, 894, 969, 1022
MmeI	TCCRAC	2 cut(s)	514, 955
MroI	TCCGGA	1 cut(s)	836
MseI	TTAA	6 cut(s)	21, 303, 390, 603, 696, 1114
MslI	CAYNNNNRTG	2 cut(s)	563, 743
MspA1I	CMGCKG	1 cut(s)	947
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	129, 837
MunI	CAATTG	1 cut(s)	894
MwoI	GCNNNNNNNGC	3 cut(s)	104, 350, 425
NdeII	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
NlaIII	CATG	5 cut(s)	491, 511, 523, 562, 1049
NlaIV	GGNNCC	4 cut(s)	121, 226, 246, 823
NmuCI	GTSAC	2 cut(s)	638, 991
NspI	RCATGY	2 cut(s)	491, 1049
PagI	TCATGA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	1045
PfeI	GAWTC	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	106, 153, 288, 757
PpuMI	RGGWCCY	1 cut(s)	244
PscI	ACATGT	1 cut(s)	1045
Psp1406I	AACGTT	1 cut(s)	1091
Psp5II	RGGWCCY	1 cut(s)	244
PspEI	GGTNACC	1 cut(s)	991
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	4 cut(s)	121, 226, 246, 823
PspPI	GGNCC	3 cut(s)	224, 244, 1006
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	3 cut(s)	33, 853, 901
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	5 cut(s)	78, 137, 173, 881, 966
RsaNI	GTAC	5 cut(s)	77, 136, 172, 880, 965
RseI	CAYNNNNRTG	2 cut(s)	563, 743
SaqAI	TTAA	6 cut(s)	21, 303, 390, 603, 696, 1114
SatI	GCNGC	4 cut(s)	105, 152, 287, 756
Sau3AI	GATC	8 cut(s)	9, 33, 234, 482, 853, 901, 982, 1035
Sau96I	GGNCC	3 cut(s)	224, 244, 1006
ScaI	AGTACT	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	930
SfaNI	GCATC	2 cut(s)	613, 767
SinI	GGWCC	2 cut(s)	244, 1006
SmiMI	CAYNNNNRTG	2 cut(s)	563, 743
SmlI	CTYRAG	3 cut(s)	146, 695, 848
SmoI	CTYRAG	3 cut(s)	146, 695, 848
Sse9I	AATT	5 cut(s)	396, 689, 894, 969, 1022
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	99, 384
StyI	CCWWGG	2 cut(s)	175, 1002
TaaI	ACNGT	2 cut(s)	61, 301
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	7 cut(s)	39, 63, 69, 191, 291, 827, 1062
TasI	AATT	5 cut(s)	396, 689, 894, 969, 1022
TatI	WGTACW	2 cut(s)	76, 964
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	6 cut(s)	21, 303, 390, 603, 696, 1114
Tru9I	TTAA	6 cut(s)	21, 303, 390, 603, 696, 1114
TscAI	CASTG	2 cut(s)	121, 730
TseFI	GTSAC	2 cut(s)	638, 991
TseI	GCWGC	4 cut(s)	104, 151, 286, 755
Tsp45I	GTSAC	2 cut(s)	638, 991
TspDTI	ATGAA	3 cut(s)	508, 575, 1015
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	2 cut(s)	121, 730
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	244, 1006
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	2 cut(s)	491, 1049
XspI	CTAG	2 cut(s)	99, 384
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.