Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1454

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

aaaaatgatggttcccagaagatttccggaaatgctctcaaggatctctacaagtcatttgcgtccgagtaccctattgtctcaattgaagatccctttgaccaagatgattgggagcactactccaagatgacagctgaatgtggagagcaagtacaaatcgtcggagatgatctattggtcaccaaccccaagagggttgagaaagcaatcaaggagaaaagttgcaatgctcttcttctgaaggtgaatcaaattgggtccgtaactgagagtattgaggccgtaagaatgtctaagaaagctgggtggggtgtcatggccagccacagaagcggagaaactgaggacacattcattgctgatctttctgtcggtttggccacgggtcaaatcaagaccggtgctccctgcaggtcagagcgtcttgccaagtataaccagctcttgcgtattgaggaggaacttggttcagcagcagtctatgccggagcaaagttccgtgtgccagtcgaaccctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

174

Amino Acids

19.12

Weight (kDa)

5.33

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	51, 86
AcoI	YGGCCR	2 cut(s)	321, 381
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	71, 156
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	3 cut(s)	137, 305, 445
AluI	AGCT	3 cut(s)	137, 305, 445
Alw21I	GWGCWC	2 cut(s)	120, 409
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	51, 86
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	3 cut(s)	282, 321, 381
ApeKI	GCWGC	1 cut(s)	476
AsiGI	ACCGGT	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	175, 259
AvaII	GGWCC	1 cut(s)	261
BalI	TGGCCA	2 cut(s)	323, 383
Bbv12I	GWGCWC	2 cut(s)	120, 409
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	13, 262
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	2 cut(s)	26, 401
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	2 cut(s)	235, 357
BseAI	TCCGGA	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	2 cut(s)	235, 357
BseMII	CTCAG	2 cut(s)	261, 336
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	488
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	284, 323, 383
BshTI	ACCGGT	1 cut(s)	401
BsiHKAI	GWGCWC	2 cut(s)	120, 409
BsiSI	CCGG	3 cut(s)	27, 402, 489
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	284, 323, 383
Bsp1286I	GDGCHC	2 cut(s)	120, 409
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	43, 91, 172, 364
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	284, 323, 383
BspCNI	CTCAG	2 cut(s)	262, 337
BspEI	TCCGGA	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	13, 262
BspMAI	CTGCAG	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	51, 86
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	235, 357
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	43, 91, 172, 364
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	270, 297, 345
BstDSI	CCRYGG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	181
BstKTI	GATC	4 cut(s)	46, 94, 175, 367
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	4 cut(s)	43, 91, 172, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 485
BstPI	GGTNACC	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	43, 91
BstYI	RGATCY	2 cut(s)	43, 91
BsuRI	GGCC	3 cut(s)	284, 323, 383
BtgI	CCRYGG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	2 cut(s)	51, 413
Csp6I	GTAC	2 cut(s)	70, 155
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	7 cut(s)	137, 284, 305, 323, 327, 383, 445
CviKI_1	RGCY	7 cut(s)	137, 284, 305, 323, 327, 383, 445
CviQI	GTAC	2 cut(s)	70, 155
DdeI	CTNAG	3 cut(s)	270, 297, 345
DpnI	GATC	4 cut(s)	45, 93, 174, 366
DpnII	GATC	4 cut(s)	43, 91, 172, 364
EaeI	YGGCCR	2 cut(s)	321, 381
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
FaeI	CATG	1 cut(s)	322
FaiI	YATR	3 cut(s)	320, 438, 486
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	477
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	284, 323, 383
HapII	CCGG	3 cut(s)	27, 402, 489
HgaI	GACGC	2 cut(s)	51, 413
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	27, 402, 489
HphI	GGTGA	2 cut(s)	175, 259
Hpy188I	TCNGA	4 cut(s)	67, 167, 243, 421
Hpy188III	TCNNGA	2 cut(s)	27, 397
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	228, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 485
HpyF3I	CTNAG	3 cut(s)	270, 297, 345
Hsp92II	CATG	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	43, 91, 172, 364
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	3 cut(s)	115, 412, 491
LpnPI	CCDG	9 cut(s)	29, 40, 291, 337, 400, 415, 424, 455, 502
Lsp1109I	GCAGC	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	181, 265
MalI	GATC	4 cut(s)	45, 93, 174, 366
MboI	GATC	4 cut(s)	43, 91, 172, 364
MboII	GAAGA	4 cut(s)	31, 101, 227, 230
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	43, 91
MhlI	GDGCHC	2 cut(s)	120, 409
MlsI	TGGCCA	2 cut(s)	323, 383
MluCI	AATT	2 cut(s)	84, 255
MluNI	TGGCCA	2 cut(s)	323, 383
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	189, 274, 340, 451, 454
Mox20I	TGGCCA	2 cut(s)	323, 383
MroI	TCCGGA	1 cut(s)	26
MscI	TGGCCA	2 cut(s)	323, 383
Msp20I	TGGCCA	2 cut(s)	323, 383
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	27, 402, 489
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	333, 485
NdeII	GATC	4 cut(s)	43, 91, 172, 364
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	13, 262
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	250
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	13, 262
PspPI	GGNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	43, 91
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	71, 156
RsaNI	GTAC	2 cut(s)	70, 155
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	4 cut(s)	43, 91, 172, 364
Sau96I	GGNCC	1 cut(s)	261
SbfI	CCTGCAGG	1 cut(s)	416
SdaI	CCTGCAGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	120, 409
SetI	ASST	5 cut(s)	139, 249, 307, 419, 447
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse8387I	CCTGCAGG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	84, 255
SsiI	CCGC	1 cut(s)	336
TaqI	TCGA	1 cut(s)	513
TasI	AATT	2 cut(s)	84, 255
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	2 cut(s)	253, 491
VpaK11BI	GGWCC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.