Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034562.1

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1600

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034562.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 755 bp

gacccaacagaacagacccaaattgacaattatatggttcaacagcttgatggaactacaaatgaatggggttggtgcaaacagaagcttggagcaaatgcaatattggcagtgtctcttgctgtttgtaaagcaggtgccattgtgaaaaagataccgctatacaagcacatagccaatcttgctggaaacaagaccttggttctacctgttcctgcatttaatgtcatcaatggaggttctcatgctggcaataaactagccatgcaggaatttatgattctccctgttggagcatcttcttttaaggaagccatgaagatgggtgtagaagtatatcatcatctgaaggctgtaattaagaagaagtatggacaagatgccacaaatgttggggatgaaggtggctttgcacccaatattcaggaaaacaaagagggtcttgaacttctgaagacagctattgctaaagctggatataccggaaaggttgttattgggatggatgttgctgcttcagaattctatgatgataaggataagacttatgatttgaatttcaaggaagagaaaaatgacggatcacaaagaatatcaggagacagtctgaagaatgtttacaagtcatttgttacagagtatccaattgtgtcaattgaagatccctttgatcaggatgactgggaacactatgctaagatgactggtgaaattggcgagcaagtgcaaattgttggtgatgatctccttgttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

252

Amino Acids

27.62

Weight (kDa)

5.1

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	2 cut(s)	589, 656
AcsI	RAATTY	3 cut(s)	272, 521, 556
AcuI	CTGAAG	4 cut(s)	368, 473, 501, 629
AgsI	TTSAA	5 cut(s)	41, 446, 556, 562, 659
AluBI	AGCT	4 cut(s)	46, 88, 461, 473
AluI	AGCT	4 cut(s)	46, 88, 461, 473
Alw26I	GTCTC	2 cut(s)	120, 594
AlwI	GGATC	2 cut(s)	589, 656
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	3 cut(s)	272, 521, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AsuHPI	GGTGA	2 cut(s)	719, 749
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	602, 634
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	44, 316, 496
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	120, 594
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	139
BmrI	ACTGGG	1 cut(s)	691
BmsI	GCATC	2 cut(s)	305, 370
BmuI	ACTGGG	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	686, 709
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	4 cut(s)	403, 507, 511, 682
BseNI	ACTGG	2 cut(s)	686, 709
BseXI	GCAGC	1 cut(s)	499
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	483
BsmAI	GTCTC	2 cut(s)	120, 594
Bsp143I	GATC	4 cut(s)	581, 661, 670, 742
BspACI	CCGC	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	589, 656
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	686, 709
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	581, 661, 670, 742
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	250, 719
BstDEI	CTNAG	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	403, 507, 511, 682
BstKTI	GATC	4 cut(s)	584, 664, 673, 745
BstMAI	GTCTC	2 cut(s)	120, 594
BstMBI	GATC	4 cut(s)	581, 661, 670, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 166, 182
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	403, 507, 511, 682
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	250, 719
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	3 cut(s)	245, 265, 316
CviJI	RGCY	9 cut(s)	46, 88, 176, 263, 314, 353, 408, 461, 473
CviKI_1	RGCY	9 cut(s)	46, 88, 176, 263, 314, 353, 408, 461, 473
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	4 cut(s)	583, 663, 672, 744
DpnII	GATC	4 cut(s)	581, 661, 670, 742
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	198
Eco57I	CTGAAG	4 cut(s)	368, 473, 501, 629
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	248, 268, 319
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	3 cut(s)	244, 264, 315
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	4 cut(s)	410, 514, 518, 689
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	3 cut(s)	248, 268, 319
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	719, 749
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	4 cut(s)	348, 453, 520, 609
Hpy188III	TCNNGA	4 cut(s)	425, 443, 597, 674
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	2 cut(s)	343, 395
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4V	TGCA	6 cut(s)	78, 101, 218, 268, 413, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 166, 182
HpyF3I	CTNAG	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	248, 268, 319
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	4 cut(s)	581, 661, 670, 742
LmnI	GCTCC	2 cut(s)	92, 293
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	305, 370
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	4 cut(s)	583, 663, 672, 744
MboI	GATC	4 cut(s)	581, 661, 670, 742
MboII	GAAGA	7 cut(s)	291, 331, 376, 466, 578, 622, 671
MfeI	CAATTG	2 cut(s)	645, 654
MflI	RGATCY	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	230, 430
MseI	TTAA	3 cut(s)	222, 306, 360
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	483
MunI	CAATTG	2 cut(s)	645, 654
MwoI	GCNNNNNNNGC	3 cut(s)	107, 166, 182
NdeII	GATC	4 cut(s)	581, 661, 670, 742
NlaIII	CATG	3 cut(s)	248, 268, 319
NlaIV	GGNNCC	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	222, 306, 360
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	4 cut(s)	581, 661, 670, 742
SfaNI	GCATC	2 cut(s)	305, 370
SmiMI	CAYNNNNRTG	1 cut(s)	320
SsiI	CCGC	1 cut(s)	158
SspI	AATATT	2 cut(s)	105, 421
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	222, 306, 360
Tru9I	TTAA	3 cut(s)	222, 306, 360
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	78, 332, 414
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	272, 521, 556
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.