Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039689.1

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2943

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1286 bp

atggcgacctcgatcaagctcatcaaggcccgtcagatcttcgacagccgtggaaatcccaccgttgaagttgatgttactctttccgatggaactctggccagagcggccgtgccgagtggagcttccacaggtgtatatgaagcactggagttgagagatggcggatcggattaccttgggaagggtgtcctgaaggctgtggagaatgtgaatggcatcattggacctgccttgattggaaaggacccaacagaacagacccaaattgacaattatatggttcaacagcttgatggaactacaaatgaatggggttggtgcaaacagaagcttggagcaaatgcaatattggcagtgtctcttgctgtttgtaaagcaggtgccattgtgaaaaagataccgctatacaagcacatagccaatcttgctggaaacaagaccttggttctacctgttcctgcatttaatgtcatcaatggaggttctcatgctggcaataaactagccatgcaggaatttatgattctccctgttggagcatcttcttttaaggaagccatgaagatgggtgtagaagtatatcatcatctgaaggctgtaattaagaagaagtatggacaagatgccacaaatgttggggatgaaggtggctttgcacccaatattcaggaaaacaaagagggtcttgaacttctgaagacagctattgctaaagctggatataccggaaaggttgttattgggatggatgttgctgcttcagaattctatgatgataaggataagacttatgatttgaatttcaaggaagagaaaaatgacggatcacaaagaatatcaggagacagtctgaagaatgtttacaagtcatttgttacagagtatccaattgtgtcaattgaagatccctttgatcaggatgactgggaacactatgctaagatgactggtgaaattggcgagcaagtgcaaattgttggtgatgatctccttgttacaaacccaaagcgagtggagaaagcaatcaaggagaagagctgcaatgcccttcttttgaaggtgaatcaaattggttcagtaaccgaaagtattgaagctgtgaaaatgtcaaaacgtgctggatggggtgtcatggcaagtcaccgaagtggtgaaactgaggatactttcattgctgacctttctgtggggcttgcaacgggccagattaagactggagctccatgcagatccgagcgtcttgctaagtacaaccagcttcttagaattgaagaggagcttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

429

Amino Acids

46.36

Weight (kDa)

5.71

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	2 cut(s)	238, 371
AccB1I	GGYRCC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	3 cut(s)	107, 165, 404
AclWI	GGATC	4 cut(s)	175, 835, 902, 1227
AcoI	YGGCCR	2 cut(s)	99, 108
AcsI	RAATTY	3 cut(s)	518, 767, 802
AcuI	CTGAAG	5 cut(s)	215, 614, 719, 747, 875
AfaI	GTAC	1 cut(s)	1253
AfiI	CCNNNNNNNGG	2 cut(s)	184, 1189
AgsI	TTSAA	9 cut(s)	68, 287, 692, 802, 808, 905, 1060, 1097, 1274
AjuI	GAANNNNNNNTTGG	1 cut(s)	1266
AleI	CACNNNNGTG	1 cut(s)	1149
Alw21I	GWGCWC	1 cut(s)	1225
Alw26I	GTCTC	2 cut(s)	366, 840
AlwI	GGATC	4 cut(s)	175, 835, 902, 1227
AoxI	GGCC	4 cut(s)	27, 99, 108, 1204
ApeKI	GCWGC	2 cut(s)	758, 1041
ApoI	RAATTY	3 cut(s)	518, 767, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspS9I	GGNCC	4 cut(s)	28, 227, 247, 1204
AsuHPI	GGTGA	5 cut(s)	965, 995, 1075, 1136, 1166
AvaII	GGWCC	2 cut(s)	227, 247
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	1225
BarI	GAAGNNNNNNTAC	2 cut(s)	848, 880
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	1225
BbvI	GCAGC	2 cut(s)	745, 1028
BccI	CCATC	6 cut(s)	83, 155, 290, 562, 742, 1119
BceAI	ACGGC	2 cut(s)	33, 95
BcgI	CGANNNNNNTGC	2 cut(s)	1226, 1260
BciVI	GTATCC	2 cut(s)	897, 1159
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	2 cut(s)	366, 840
BfaI	CTAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	238, 371
BfuI	GTATCC	2 cut(s)	897, 1159
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	3 cut(s)	108, 759, 1042
BlsI	GCNGC	3 cut(s)	109, 760, 1043
Bme18I	GGWCC	2 cut(s)	227, 247
BmgT120I	GGNCC	4 cut(s)	28, 227, 247, 1204
BmiI	GGNNCC	2 cut(s)	249, 385
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	228, 551, 616
BmuI	ACTGGG	1 cut(s)	937
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	2 cut(s)	170, 1239
BsaJI	CCNNGG	3 cut(s)	49, 178, 444
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	1207, 1237
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 1189
Bse1I	ACTGG	4 cut(s)	153, 932, 955, 1222
Bse3DI	GCAATG	2 cut(s)	1051, 1173
BseDI	CCNNGG	3 cut(s)	49, 178, 444
BseGI	GGATG	5 cut(s)	649, 753, 757, 928, 1130
BseLI	CCNNNNNNNGG	2 cut(s)	184, 1189
BseMI	GCAATG	2 cut(s)	1051, 1173
BseMII	CTCAG	1 cut(s)	1152
BseNI	ACTGG	4 cut(s)	153, 932, 955, 1222
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	745, 1028
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	29, 101, 110, 1206
BshNI	GGYRCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	1225
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	184, 1189
BsmAI	GTCTC	2 cut(s)	366, 840
BsnI	GGCC	4 cut(s)	29, 101, 110, 1206
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp143I	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
BspACI	CCGC	3 cut(s)	107, 165, 404
BspANI	GGCC	4 cut(s)	29, 101, 110, 1206
BspCNI	CTCAG	1 cut(s)	1153
BspLI	GGNNCC	2 cut(s)	249, 385
BspMI	ACCTGC	2 cut(s)	238, 371
BspPI	GGATC	4 cut(s)	175, 835, 902, 1227
BspQI	GCTCTTC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	1051, 1173
BsrI	ACTGG	4 cut(s)	153, 932, 955, 1222
BssECI	CCNNGG	3 cut(s)	49, 178, 444
BssMI	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
BssT1I	CCWWGG	2 cut(s)	178, 444
Bst4CI	ACNGT	2 cut(s)	64, 851
Bst6I	CTCTTC	3 cut(s)	807, 1031, 1269
BstC8I	GCNNGC	3 cut(s)	496, 965, 1197
BstDEI	CTNAG	4 cut(s)	942, 1161, 1248, 1265
BstDSI	CCRYGG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	5 cut(s)	649, 753, 757, 928, 1130
BstKTI	GATC	8 cut(s)	15, 39, 170, 830, 910, 919, 991, 1235
BstMAI	GTCTC	2 cut(s)	366, 840
BstMBI	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 353, 412, 428
BstV1I	GCAGC	2 cut(s)	745, 1028
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	3 cut(s)	36, 907, 1232
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	3 cut(s)	36, 907, 1232
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	2 cut(s)	897, 1159
BsuRI	GGCC	4 cut(s)	29, 101, 110, 1206
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	5 cut(s)	649, 753, 757, 928, 1130
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	146, 363
BveI	ACCTGC	2 cut(s)	238, 371
Cac8I	GCNNGC	3 cut(s)	496, 965, 1197
Cfr13I	GGNCC	4 cut(s)	28, 227, 247, 1204
CseI	GACGC	1 cut(s)	1229
Csp6I	GTAC	1 cut(s)	1252
CspCI	CAANNNNNGTGG	4 cut(s)	619, 654, 996, 1031
CviAII	CATG	5 cut(s)	491, 511, 562, 1135, 1227
CviQI	GTAC	1 cut(s)	1252
DdeI	CTNAG	4 cut(s)	942, 1161, 1248, 1265
DpnI	GATC	8 cut(s)	14, 38, 169, 829, 909, 918, 990, 1234
DpnII	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
EaeI	YGGCCR	2 cut(s)	99, 108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	3 cut(s)	807, 1031, 1269
EarI	CTCTTC	3 cut(s)	807, 1031, 1269
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	1223
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	178, 444
Eco24I	GRGCYC	1 cut(s)	1225
Eco47I	GGWCC	2 cut(s)	227, 247
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	5 cut(s)	215, 614, 719, 747, 875
EcoICRI	GAGCTC	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	767
EcoT14I	CCWWGG	2 cut(s)	178, 444
EcoT38I	GRGCYC	1 cut(s)	1225
ErhI	CCWWGG	2 cut(s)	178, 444
FaeI	CATG	5 cut(s)	494, 514, 565, 1138, 1230
FalI	AAGNNNNNCTT	3 cut(s)	672, 704, 1266
FatI	CATG	5 cut(s)	490, 510, 561, 1134, 1226
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	3 cut(s)	108, 759, 1042
FokI	GGATG	5 cut(s)	656, 760, 764, 935, 1137
FriOI	GRGCYC	1 cut(s)	1225
Fsp4HI	GCNGC	3 cut(s)	108, 759, 1042
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	3 cut(s)	108, 759, 1042
GsuI	CTGGAG	2 cut(s)	170, 1239
HaeIII	GGCC	4 cut(s)	29, 101, 110, 1206
HapII	CCGG	1 cut(s)	729
HgaI	GACGC	1 cut(s)	1229
Hin1II	CATG	5 cut(s)	494, 514, 565, 1138, 1230
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	526, 1066
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	5 cut(s)	965, 995, 1075, 1136, 1166
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	8 cut(s)	36, 88, 172, 594, 699, 766, 855, 1237
Hpy188III	TCNNGA	5 cut(s)	193, 671, 689, 843, 920
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	6 cut(s)	178, 190, 589, 641, 1054, 1061
HpyCH4III	ACNGT	2 cut(s)	64, 851
HpyCH4IV	ACGT	1 cut(s)	1117
HpyCH4V	TGCA	9 cut(s)	324, 347, 464, 514, 659, 973, 1044, 1199, 1230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 353, 412, 428
HpyF3I	CTNAG	4 cut(s)	942, 1161, 1248, 1265
HpySE526I	ACGT	1 cut(s)	1117
Hsp92II	CATG	5 cut(s)	494, 514, 565, 1138, 1230
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	6 cut(s)	122, 338, 539, 1220, 1228, 1279
Lsp1109I	GCAGC	2 cut(s)	745, 1028
LweI	GCATC	3 cut(s)	228, 551, 616
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	1117
MaeIII	GTNAC	5 cut(s)	76, 877, 997, 1081, 1142
MalI	GATC	8 cut(s)	14, 38, 169, 829, 909, 918, 990, 1234
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
MfeI	CAATTG	2 cut(s)	891, 900
MflI	RGATCY	3 cut(s)	36, 907, 1232
MhlI	GDGCHC	1 cut(s)	1225
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	19, 476, 676, 1156, 1270
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	4 cut(s)	468, 552, 606, 1212
MslI	CAYNNNNRTG	2 cut(s)	566, 1149
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	729
MunI	CAATTG	2 cut(s)	891, 900
MwoI	GCNNNNNNNGC	4 cut(s)	107, 353, 412, 428
NdeII	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
NlaIII	CATG	5 cut(s)	494, 514, 565, 1138, 1230
NlaIV	GGNNCC	2 cut(s)	249, 385
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	1142
OliI	CACNNNNGTG	1 cut(s)	1149
PaqCI	CACCTGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	526, 1066
PkrI	GCNGC	3 cut(s)	109, 760, 1043
PpuMI	RGGWCCY	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	1225
Psp5II	RGGWCCY	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	249, 385
PspPI	GGNCC	4 cut(s)	28, 227, 247, 1204
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	3 cut(s)	36, 907, 1232
RsaI	GTAC	1 cut(s)	1253
RsaNI	GTAC	1 cut(s)	1252
RseI	CAYNNNNRTG	2 cut(s)	566, 1149
SacI	GAGCTC	1 cut(s)	1225
SapI	GCTCTTC	1 cut(s)	1031
SaqAI	TTAA	4 cut(s)	468, 552, 606, 1212
SatI	GCNGC	3 cut(s)	108, 759, 1042
Sau3AI	GATC	8 cut(s)	12, 36, 167, 827, 907, 916, 988, 1232
Sau96I	GGNCC	4 cut(s)	28, 227, 247, 1204
SduI	GDGCHC	1 cut(s)	1225
SfaNI	GCATC	3 cut(s)	228, 551, 616
SfiI	GGCCNNNNNGGCC	1 cut(s)	107
SinI	GGWCC	2 cut(s)	227, 247
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1149
SsiI	CCGC	3 cut(s)	107, 165, 404
SspI	AATATT	2 cut(s)	351, 667
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	1225
StyI	CCWWGG	2 cut(s)	178, 444
TaaI	ACNGT	2 cut(s)	64, 851
TaiI	ACGT	1 cut(s)	1120
TaqI	TCGA	2 cut(s)	11, 42
TatI	WGTACW	1 cut(s)	1251
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	526, 1066
Tru1I	TTAA	4 cut(s)	468, 552, 606, 1212
Tru9I	TTAA	4 cut(s)	468, 552, 606, 1212
TscAI	CASTG	2 cut(s)	153, 363
TseFI	GTSAC	1 cut(s)	1142
TseI	GCWGC	2 cut(s)	758, 1041
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	5 cut(s)	156, 324, 578, 660, 1162
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	2 cut(s)	153, 363
VpaK11BI	GGWCC	2 cut(s)	227, 247
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	3 cut(s)	518, 767, 802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.