Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002577

Physical Location & Seq

Genomic Coordinates Forward (+)

5073822 .. 5077117

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCGACCACGATGAAGCTCATCAAGGCCCGTCAGATCTTCGACAGCCGTGGAAATCCCACCGTTGAAGTTGATGTTACTCTTTCCGATGGAACTCTGGCCAGAGCTGCCGTGCCGAGTGGAGCTTCCACAGGTGTATATGAAGCACTGGAGTTGAGAGATGGCGGATCGGATTACCTTGGGAAGGGTGTCCTGAAGGCTGTGGAGAATGTGAATGGCATCATCGGACCTGCCTTGATTGGAAAGGACCCAACAGAACAGACCCAAATTGACAATTATATGGTTCAACAGCTTGATGGAACCACAAATGAATGGGGTTGGTGCAAACAGAAGCTCGGAGCAAATGCTATATTAGCAGTGTCTCTTGCTGTTTGTAAAGCAGGTGCCATTGTGAAAAAGATACCCCTATACAAGCACATAGCCAATCTTGCTGGAAACAAGACCTTGGTGCTGCCTGTTCCTGCATTTAATGTCATCAATGGAGGTTCTCATGCTGGCAATAAACTAGCCATGCAGGAATTTATGATTCTCCCTGTTGGTGCATCTTCTTTTAAGGAAGCCATGAAGATGGGTGTAGAAGTATATCATCATCTGAAGGCTGTAATTAAGAAGAAGTATGGACAAGATGCCACAAATGTTGGGGATGAAGGTGGCTTTGCACCCAATATTCAGGAAAACAAAGAGGGTCTTGAACTTCTGAAGACAGCTATTGCTAAAGCTGGATATACCGGAAAGGTTGTTATTGGGATGGATGTTGCTGCTTCAGAATTCTATGATGATAAGGATGAGACTTATGATTTGAATTTCAAGGAAGAGAAAAATGACGGATCACAAAGAATATCAGGAGACAGTCTGAAGAATGTTTACAAGTCATTTGTTACAGAGTATCCAATTGTGTCAATTGAAGATCCCTTTGATCAGGATGACTGGGAACACTATGCTAAGATGACTGGTGAAATTGGCGAGCAAGTGCAAATTGTTGGTGATGATCTCCTTGTTACAAACCCAAAGCGAGTGGAGAAAGCAATCAAGGAGAAGAGCTGCAATGCCCTTCTTTTGAAGGTGAATCAAATTGGTTCAGTAACTGAAAGTATTGAAGCTGTGAAAATGTCAAAACGTGCTGGATGGGGTGTCATGGCAAGTCACCGAAGTGGTGAAACTGAGGATACTTTCATTGCTGACCTTTCTGTGGGGCTTGCAACGGGCCAGATTAAGACTGGAGCTCCATGCAGATCCGAGCGTCTTGCTAAGTATAACCAGCTTCTTAGAATTGAAGAGGAGCTTGGGTCTGCAGCAGTCTATGCTGGATCAAAATTCAGAGTACCAGTGGAGCCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

446

Amino Acids

48.22

Weight (kDa)

5.61

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_N	PF03952	7 - 140	1e-52	Enolase, N-terminal domain
Enolase_C	PF00113	149 - 440	7.6e-159	Enolase, C-terminal TIM barrel domain
MR_MLE_C	PF13378	275 - 407	3.4e-08	Enolase C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36530 AT2G36530
fragaria_vesca	FvH4_6g17770 FvH4_6g17770 FvH4_7g28150
malus_domestica	MD01G1185500.v1.1 MD12G1016600.v1.1 MD14G1014600.v1.1
prunus_persica	Prupe.2G281900_v2.0.a1 Prupe.2G281900_v2.0.a1 Prupe.7G118700_v2.0.a1
pyrus_communis	pycom01g19710 pycom12g01360 pycom14g01220
rosa_chinensis	RchiOBHm_Chr1g0375091 RchiOBHm_Chr3g0472001
rosa_laevigata	RLG00000000873 RLG00000024113
rosa_multiflora	Rmu_sc0000090.1_g000028 Rmu_sc0000554.1_g000017 Rmu_sc0002532.1_g000001 Rmu_sc0034562.1_g000001 Rmu_sc0039689.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283020 Rroxscaffold_6G00409370
rosa_rugosa	Rorug01G0388300 Rorug01G0388400 Rorug03G0121500 Rorug03G0121600
rosa_samantha	Rh1AG398800 Rh1BG365700 Rh1CG378600 Rh1DG396400 Rh3AG173200 Rh3BG198600 Rh3CG189800 Rh3CG197100 Rh3DG175800
rosa_wichuraiana	Rw1G035410 Rw3G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	2 cut(s)	238, 371
AccB1I	GGYRCC	1 cut(s)	383
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	5 cut(s)	175, 835, 902, 1227, 1315
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	4 cut(s)	518, 767, 802, 1313
AcuI	CTGAAG	5 cut(s)	215, 614, 719, 747, 875
AfaI	GTAC	1 cut(s)	1323
AfiI	CCNNNNNNNGG	2 cut(s)	184, 1189
AgsI	TTSAA	9 cut(s)	68, 287, 692, 802, 808, 905, 1060, 1097, 1274
AjuI	GAANNNNNNNTTGG	2 cut(s)	1266, 1298
AleI	CACNNNNGTG	1 cut(s)	1149
Alw21I	GWGCWC	1 cut(s)	1225
Alw26I	GTCTC	3 cut(s)	366, 782, 840
AlwI	GGATC	5 cut(s)	175, 835, 902, 1227, 1315
AlwNI	CAGNNNCTG	1 cut(s)	1085
AoxI	GGCC	3 cut(s)	27, 99, 1204
ApeKI	GCWGC	5 cut(s)	107, 451, 758, 1041, 1292
ApoI	RAATTY	4 cut(s)	518, 767, 802, 1313
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspS9I	GGNCC	4 cut(s)	28, 227, 247, 1204
AsuHPI	GGTGA	5 cut(s)	965, 995, 1075, 1136, 1166
AvaII	GGWCC	2 cut(s)	227, 247
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	1225
BarI	GAAGNNNNNNTAC	2 cut(s)	848, 880
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	1225
BbvI	GCAGC	5 cut(s)	94, 438, 745, 1028, 1304
BccI	CCATC	6 cut(s)	83, 155, 290, 562, 742, 1119
BceAI	ACGGC	2 cut(s)	33, 95
BcgI	CGANNNNNNTGC	2 cut(s)	1226, 1260
BciVI	GTATCC	2 cut(s)	897, 1159
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	3 cut(s)	366, 782, 840
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	1290
BfuAI	ACCTGC	2 cut(s)	238, 371
BfuI	GTATCC	2 cut(s)	897, 1159
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	5 cut(s)	108, 452, 759, 1042, 1293
BlsI	GCNGC	5 cut(s)	109, 453, 760, 1043, 1294
Bme18I	GGWCC	2 cut(s)	227, 247
BmgT120I	GGNCC	4 cut(s)	28, 227, 247, 1204
BmiI	GGNNCC	4 cut(s)	249, 301, 385, 1332
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	228, 551, 616
BmuI	ACTGGG	1 cut(s)	937
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	2 cut(s)	170, 1239
BsaJI	CCNNGG	3 cut(s)	49, 178, 444
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	4 cut(s)	1207, 1237, 1271, 1301
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 1189
Bse1I	ACTGG	5 cut(s)	153, 932, 955, 1222, 1325
Bse3DI	GCAATG	2 cut(s)	1051, 1173
BseDI	CCNNGG	3 cut(s)	49, 178, 444
BseGI	GGATG	6 cut(s)	649, 753, 757, 790, 928, 1130
BseLI	CCNNNNNNNGG	2 cut(s)	184, 1189
BseMI	GCAATG	2 cut(s)	1051, 1173
BseMII	CTCAG	1 cut(s)	1152
BseNI	ACTGG	5 cut(s)	153, 932, 955, 1222, 1325
BseRI	GAGGAG	1 cut(s)	1292
BseXI	GCAGC	5 cut(s)	94, 438, 745, 1028, 1304
BshFI	GGCC	3 cut(s)	29, 101, 1206
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	1225
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	184, 1189
BsmAI	GTCTC	3 cut(s)	366, 782, 840
BsnI	GGCC	3 cut(s)	29, 101, 1206
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp143I	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	29, 101, 1206
BspCNI	CTCAG	1 cut(s)	1153
BspLI	GGNNCC	4 cut(s)	249, 301, 385, 1332
BspMAI	CTGCAG	1 cut(s)	1294
BspMI	ACCTGC	2 cut(s)	238, 371
BspPI	GGATC	5 cut(s)	175, 835, 902, 1227, 1315
BspQI	GCTCTTC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	1051, 1173
BsrI	ACTGG	5 cut(s)	153, 932, 955, 1222, 1325
BssECI	CCNNGG	3 cut(s)	49, 178, 444
BssMI	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
BssT1I	CCWWGG	2 cut(s)	178, 444
Bst4CI	ACNGT	2 cut(s)	64, 851
Bst6I	CTCTTC	3 cut(s)	807, 1031, 1269
BstAPI	GCANNNNNTGC	1 cut(s)	1301
BstC8I	GCNNGC	3 cut(s)	496, 965, 1197
BstDEI	CTNAG	4 cut(s)	942, 1161, 1248, 1265
BstDSI	CCRYGG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	6 cut(s)	649, 753, 757, 790, 928, 1130
BstKTI	GATC	8 cut(s)	39, 170, 830, 910, 919, 991, 1235, 1310
BstMAI	GTCTC	3 cut(s)	366, 782, 840
BstMBI	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 353, 428, 1301
BstSFI	CTRYAG	1 cut(s)	1290
BstV1I	GCAGC	5 cut(s)	94, 438, 745, 1028, 1304
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	3 cut(s)	36, 907, 1232
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	3 cut(s)	36, 907, 1232
BsuI	GTATCC	2 cut(s)	897, 1159
BsuRI	GGCC	3 cut(s)	29, 101, 1206
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	6 cut(s)	649, 753, 757, 790, 928, 1130
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	146, 363, 1332
BveI	ACCTGC	2 cut(s)	238, 371
Cac8I	GCNNGC	3 cut(s)	496, 965, 1197
CaiI	CAGNNNCTG	1 cut(s)	1085
Cfr13I	GGNCC	4 cut(s)	28, 227, 247, 1204
CseI	GACGC	1 cut(s)	1229
Csp6I	GTAC	1 cut(s)	1322
CspCI	CAANNNNNGTGG	4 cut(s)	619, 654, 996, 1031
CviAII	CATG	5 cut(s)	491, 511, 562, 1135, 1227
CviQI	GTAC	1 cut(s)	1322
DdeI	CTNAG	4 cut(s)	942, 1161, 1248, 1265
DpnI	GATC	8 cut(s)	38, 169, 829, 909, 918, 990, 1234, 1309
DpnII	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	3 cut(s)	807, 1031, 1269
EarI	CTCTTC	3 cut(s)	807, 1031, 1269
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	1223
Eco130I	CCWWGG	2 cut(s)	178, 444
Eco24I	GRGCYC	1 cut(s)	1225
Eco47I	GGWCC	2 cut(s)	227, 247
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	5 cut(s)	215, 614, 719, 747, 875
EcoICRI	GAGCTC	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	767
EcoT14I	CCWWGG	2 cut(s)	178, 444
EcoT38I	GRGCYC	1 cut(s)	1225
ErhI	CCWWGG	2 cut(s)	178, 444
FaeI	CATG	5 cut(s)	494, 514, 565, 1138, 1230
FalI	AAGNNNNNCTT	4 cut(s)	672, 704, 1266, 1298
FatI	CATG	5 cut(s)	490, 510, 561, 1134, 1226
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	5 cut(s)	108, 452, 759, 1042, 1293
FokI	GGATG	6 cut(s)	656, 760, 764, 797, 935, 1137
FriOI	GRGCYC	1 cut(s)	1225
Fsp4HI	GCNGC	5 cut(s)	108, 452, 759, 1042, 1293
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	5 cut(s)	108, 452, 759, 1042, 1293
GsuI	CTGGAG	2 cut(s)	170, 1239
HaeIII	GGCC	3 cut(s)	29, 101, 1206
HapII	CCGG	1 cut(s)	729
HgaI	GACGC	1 cut(s)	1229
Hin1II	CATG	5 cut(s)	494, 514, 565, 1138, 1230
HinfI	GANTC	2 cut(s)	526, 1066
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	5 cut(s)	965, 995, 1075, 1136, 1166
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188III	TCNNGA	5 cut(s)	193, 671, 689, 843, 920
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	6 cut(s)	178, 190, 589, 641, 1054, 1061
HpyCH4III	ACNGT	2 cut(s)	64, 851
HpyCH4IV	ACGT	1 cut(s)	1117
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 353, 428, 1301
HpyF3I	CTNAG	4 cut(s)	942, 1161, 1248, 1265
HpySE526I	ACGT	1 cut(s)	1117
Hsp92II	CATG	5 cut(s)	494, 514, 565, 1138, 1230
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	6 cut(s)	122, 338, 1220, 1228, 1279, 1330
Lsp1109I	GCAGC	5 cut(s)	94, 438, 745, 1028, 1304
LweI	GCATC	3 cut(s)	228, 551, 616
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	1117
MaeIII	GTNAC	5 cut(s)	76, 877, 997, 1081, 1142
MalI	GATC	8 cut(s)	38, 169, 829, 909, 918, 990, 1234, 1309
MboI	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
MfeI	CAATTG	2 cut(s)	891, 900
MflI	RGATCY	3 cut(s)	36, 907, 1232
MhlI	GDGCHC	1 cut(s)	1225
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	4 cut(s)	476, 676, 1156, 1270
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	4 cut(s)	468, 552, 606, 1212
MslI	CAYNNNNRTG	2 cut(s)	566, 1149
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	729
MunI	CAATTG	2 cut(s)	891, 900
MwoI	GCNNNNNNNGC	4 cut(s)	107, 353, 428, 1301
NdeII	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
NlaIII	CATG	5 cut(s)	494, 514, 565, 1138, 1230
NlaIV	GGNNCC	4 cut(s)	249, 301, 385, 1332
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	1142
OliI	CACNNNNGTG	1 cut(s)	1149
PaqCI	CACCTGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	526, 1066
PkrI	GCNGC	5 cut(s)	109, 453, 760, 1043, 1294
PpuMI	RGGWCCY	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	1225
Psp5II	RGGWCCY	1 cut(s)	247
PspN4I	GGNNCC	4 cut(s)	249, 301, 385, 1332
PspPI	GGNCC	4 cut(s)	28, 227, 247, 1204
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	1294
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	3 cut(s)	36, 907, 1232
RsaI	GTAC	1 cut(s)	1323
RsaNI	GTAC	1 cut(s)	1322
RseI	CAYNNNNRTG	2 cut(s)	566, 1149
SacI	GAGCTC	1 cut(s)	1225
SapI	GCTCTTC	1 cut(s)	1031
SaqAI	TTAA	4 cut(s)	468, 552, 606, 1212
SatI	GCNGC	5 cut(s)	108, 452, 759, 1042, 1293
Sau3AI	GATC	8 cut(s)	36, 167, 827, 907, 916, 988, 1232, 1307
Sau96I	GGNCC	4 cut(s)	28, 227, 247, 1204
SduI	GDGCHC	1 cut(s)	1225
SfaNI	GCATC	3 cut(s)	228, 551, 616
SfcI	CTRYAG	1 cut(s)	1290
SinI	GGWCC	2 cut(s)	227, 247
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1149
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	1225
StyI	CCWWGG	2 cut(s)	178, 444
TaaI	ACNGT	2 cut(s)	64, 851
TaiI	ACGT	1 cut(s)	1120
TaqI	TCGA	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	526, 1066
Tru1I	TTAA	4 cut(s)	468, 552, 606, 1212
Tru9I	TTAA	4 cut(s)	468, 552, 606, 1212
TscAI	CASTG	3 cut(s)	153, 363, 1332
TseFI	GTSAC	1 cut(s)	1142
TseI	GCWGC	5 cut(s)	107, 451, 758, 1041, 1292
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	6 cut(s)	29, 156, 324, 578, 660, 1162
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	3 cut(s)	153, 363, 1332
VpaK11BI	GGWCC	2 cut(s)	227, 247
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	4 cut(s)	518, 767, 802, 1313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.