Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

12538796 .. 12539283

Gene Structure 488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAATGGAATACGAATCTTTGGAAATCACACTACGTCCTTCTAGGCTCTCAGACGCTGAGGACTTCTCGAAGTATACTGGGGTTGAAACGGTAACACAATTCACTCGTTGGAACACATTCAAATCCAAGGGGGAAGCACTTTCCTACATCAAGGACGTTTGTATTCCTCACCCTTATTGCAGATCCATCTGCATCAATGACTGTTCGATCGGAATGGTCTTCGTCAAGCCACAAGATGGTGATGACAAGTGTCGAGCGGAGATCGGGGTCACTGATTTCGTTAGAATGCAAGCTTTGGTTTTGATAGAGAACAAGGCCTCCCAGAGAGTCTTGGAGAAACTTGGTTTCCACATGGAAGGTCTCTTGAGGGAGTATACCATTCACAAAGGTACAGTTAAAGATGTTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

5.63

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	77, 377
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	89, 124
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	164, 254
BbsI	GAAGAC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	197, 233
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	51, 66
BseNI	ACTGG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	185, 210, 264
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	52, 65
BspPI	GGATC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	185, 210, 264
BssNAI	GTATAC	2 cut(s)	78, 378
BssT1I	CCWWGG	1 cut(s)	129
Bst1107I	GTATAC	2 cut(s)	78, 378
Bst4CI	ACNGT	3 cut(s)	94, 206, 397
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	52, 60
BstKTI	GATC	3 cut(s)	188, 213, 267
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	185, 210, 264
BstMCI	CGRYCG	1 cut(s)	213
BstPAI	GACNNNNGTC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZ17I	GTATAC	2 cut(s)	78, 378
BsuRI	GGCC	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	59
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	355, 412
CviJI	RGCY	4 cut(s)	49, 232, 296, 320
CviKI_1	RGCY	4 cut(s)	49, 232, 296, 320
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	52, 60
DpnI	GATC	3 cut(s)	187, 212, 266
DpnII	GATC	3 cut(s)	185, 210, 264
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	358, 415
FaiI	YATR	4 cut(s)	78, 356, 378, 413
FatI	CATG	2 cut(s)	354, 411
FblI	GTMKAC	2 cut(s)	77, 377
FspBI	CTAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	320
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	358, 415
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	17, 330
HphI	GGTGA	2 cut(s)	164, 254
Hpy166II	GTNNAC	2 cut(s)	78, 378
Hpy188I	TCNGA	2 cut(s)	55, 215
Hpy188III	TCNNGA	2 cut(s)	70, 367
Hpy8I	GTNNAC	2 cut(s)	78, 378
HpyAV	CCTTC	2 cut(s)	51, 353
HpyCH4III	ACNGT	3 cut(s)	94, 206, 397
HpyCH4IV	ACGT	2 cut(s)	37, 159
HpyCH4V	TGCA	3 cut(s)	183, 195, 292
HpyF3I	CTNAG	2 cut(s)	52, 60
HpySE526I	ACGT	2 cut(s)	37, 159
Hsp92II	CATG	2 cut(s)	358, 415
Kzo9I	GATC	3 cut(s)	185, 210, 264
LpnPI	CCDG	2 cut(s)	66, 338
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	37, 159
MaeIII	GTNAC	2 cut(s)	94, 271
MalI	GATC	3 cut(s)	187, 212, 266
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	3 cut(s)	185, 210, 264
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	55, 180, 331, 363
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	294
NdeII	GATC	3 cut(s)	185, 210, 264
NlaIII	CATG	2 cut(s)	358, 415
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	239
Ple19I	CGATCG	1 cut(s)	213
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PshAI	GACNNNNGTC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	185, 210, 264
SchI	GAGTC	1 cut(s)	339
SetI	ASST	5 cut(s)	40, 162, 298, 364, 394
SfaNI	GCATC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	101
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	94, 206, 397
TaiI	ACGT	2 cut(s)	40, 162
TaqI	TCGA	3 cut(s)	71, 209, 256
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	77, 377
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.