Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

23198285 .. 23207952

Gene Structure 9668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCACAAAATGGCAGATATTTACAGGATTGACCATGGCGTCGAAGCCTGCCTCTTCGTTCCAAGCTTCTTCTTCGAGCTCCAGCGGTCTCTGCATGGTCAGAAAACCTCTCACGACTTCCTTCTTCAATGGCGGAGTGGAGGCTCTAAAAGTTGAAGTGATTAGGGTTGCTCCTTCCAGTCGACCACATTATTCTAGACAATGTGGTGGGGCTCTTGGTGCTCGTATGAATCTATTTGACCGGTTTGCTAGAGTTGTCAAGTCATATGCAAATGCATTAATAAGTACCTTTGAAGATCCTGAGAAAATCTTAGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAAGTGTTGGCATCTCAAAAGCGGATGGAGAATAAGTACAAAGCTGCTGAACAAGCTTCTGAGGACTGGTACCGCAAAGCACAATTAGCTCTTCAAAAAGGAGAGGAGGATCTTGCACGTGAGGCTCTGAAGAGGCGTAAATCTTTTGCTGATAATGCTAATACTTTGAAATCTCAACTTGATCAACAAAAAGCTGTTGTCGATAATCTTGTGTCTAATACACGGCTTTTAGAGAGCAAGATACAGGAGGCAAGGTCGAAAAAAGATACCCTCAAAGCACGTGCTCAGTCTGCGAAGACTGCAACTAAAGTGAGTGAGATGGTGGGAAACGTCAATACAAGTAGTGCTCTTTCAGCTTTTGATAAGATGGAAGAGAAAGTCTTAGCCATGGAATCCCAAGCAGAAGCTCTTGGTCAGTTAACTACGGATGATCTGGAAGGAAAGAGTATTTGCATTGCTAGAGGGATCTTCGGTCGACGATCGATCTTGCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

290

Amino Acids

31.86

Weight (kDa)

9.55

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	78 - 266	4.8e-52	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	2 cut(s)	184, 847
AciI	CCGC	4 cut(s)	87, 135, 394, 445
AclWI	GGATC	3 cut(s)	293, 489, 845
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	521
AcvI	CACGTG	2 cut(s)	491, 653
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	289, 410, 443
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgeI	ACCGGT	1 cut(s)	243
AgsI	TTSAA	6 cut(s)	130, 158, 296, 332, 467, 541
AluBI	AGCT	8 cut(s)	68, 81, 416, 428, 461, 566, 728, 779
AluI	AGCT	8 cut(s)	68, 81, 416, 428, 461, 566, 728, 779
Alw21I	GWGCWC	4 cut(s)	83, 226, 658, 721
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	293, 489, 845
AoxI	GGCC	2 cut(s)	3, 363
ApeKI	GCWGC	1 cut(s)	416
AseI	ATTAAT	1 cut(s)	281
AsiGI	ACCGGT	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	2 cut(s)	83, 217
BbrPI	CACGTG	2 cut(s)	491, 653
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	4 cut(s)	83, 226, 658, 721
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	391, 685, 733
BceAI	ACGGC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	198, 252, 831
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	443
BmsI	GCATC	2 cut(s)	345, 392
BpiI	GAAGAC	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	854
BsaAI	YACGTR	2 cut(s)	491, 653
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	36, 759
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	180, 443
Bse3DI	GCAATG	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	36, 759
BseGI	GGATG	2 cut(s)	402, 805
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	294, 423, 671
BseNI	ACTGG	2 cut(s)	180, 443
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	403
Bsh1285I	CGRYCG	2 cut(s)	847, 854
BshFI	GGCC	2 cut(s)	5, 365
BshNI	GGYRCC	1 cut(s)	441
BshTI	ACCGGT	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	854
BsiEI	CGRYCG	2 cut(s)	847, 854
BsiHKAI	GWGCWC	4 cut(s)	83, 226, 658, 721
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	5, 365
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	5 cut(s)	83, 217, 226, 658, 721
Bsp143I	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
Bsp19I	CCATGG	2 cut(s)	36, 759
BspACI	CCGC	4 cut(s)	87, 135, 394, 445
BspANI	GGCC	2 cut(s)	5, 365
BspCNI	CTCAG	3 cut(s)	295, 424, 670
BspDI	ATCGAT	1 cut(s)	854
BspLI	GGNNCC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	293, 489, 845
BspQI	GCTCTTC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	180, 443
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	36, 759
BssMI	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	36, 759
Bst6I	CTCTTC	4 cut(s)	61, 468, 497, 738
BstACI	GRCGYC	1 cut(s)	41
BstBAI	YACGTR	2 cut(s)	491, 653
BstC8I	GCNNGC	2 cut(s)	51, 321
BstDEI	CTNAG	5 cut(s)	303, 313, 432, 657, 754
BstDSI	CCRYGG	2 cut(s)	36, 759
BstF5I	GGATG	2 cut(s)	402, 805
BstKTI	GATC	7 cut(s)	301, 484, 556, 805, 840, 854, 858
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
BstMCI	CGRYCG	2 cut(s)	847, 854
BstMWI	GCNNNNNNNGC	9 cut(s)	93, 221, 425, 458, 494, 527, 662, 671, 725
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	3 cut(s)	298, 481, 837
BstYI	RGATCY	3 cut(s)	298, 481, 837
Bsu15I	ATCGAT	1 cut(s)	854
BsuRI	GGCC	2 cut(s)	5, 365
BsuTUI	ATCGAT	1 cut(s)	854
BtgI	CCRYGG	2 cut(s)	36, 759
BtsCI	GGATG	2 cut(s)	402, 805
Cac8I	GCNNGC	2 cut(s)	51, 321
Cfr10I	RCCGGY	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	2 cut(s)	30, 347
Csp6I	GTAC	3 cut(s)	288, 409, 442
CspAI	ACCGGT	1 cut(s)	243
CviAII	CATG	3 cut(s)	37, 97, 760
CviQI	GTAC	3 cut(s)	288, 409, 442
DdeI	CTNAG	5 cut(s)	303, 313, 432, 657, 754
DpnI	GATC	7 cut(s)	300, 483, 555, 804, 839, 853, 857
DpnII	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	61, 468, 497, 738
EarI	CTCTTC	4 cut(s)	61, 468, 497, 738
EciI	GGCGGA	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	36, 759
Eco24I	GRGCYC	2 cut(s)	83, 217
Eco31I	GGTCTC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	521
Eco72I	CACGTG	2 cut(s)	491, 653
EcoICRI	GAGCTC	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	36, 759
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	83, 217
ErhI	CCWWGG	2 cut(s)	36, 759
FaeI	CATG	3 cut(s)	40, 100, 763
FaiI	YATR	6 cut(s)	38, 98, 230, 268, 270, 761
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	3 cut(s)	36, 96, 759
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	184, 847
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	409, 812
FriOI	GRGCYC	2 cut(s)	83, 217
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	3 cut(s)	198, 252, 831
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	5, 365
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	2 cut(s)	30, 347
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	40, 100, 763
HincII	GTYRAC	3 cut(s)	185, 792, 848
HindII	GTYRAC	3 cut(s)	185, 792, 848
HindIII	AAGCTT	2 cut(s)	66, 426
HinfI	GANTC	2 cut(s)	232, 764
HpaI	GTTAAC	1 cut(s)	792
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	185, 792, 848
Hpy188I	TCNGA	3 cut(s)	104, 433, 501
Hpy188III	TCNNGA	5 cut(s)	115, 198, 302, 329, 806
Hpy8I	GTNNAC	3 cut(s)	185, 792, 848
Hpy99I	CGWCG	2 cut(s)	46, 852
HpyAV	CCTTC	3 cut(s)	133, 186, 803
HpyCH4IV	ACGT	3 cut(s)	490, 652, 702
HpyCH4V	TGCA	7 cut(s)	96, 272, 278, 488, 674, 825, 862
HpyF10VI	GCNNNNNNNGC	9 cut(s)	93, 221, 425, 458, 494, 527, 662, 671, 725
HpyF3I	CTNAG	5 cut(s)	303, 313, 432, 657, 754
HpySE526I	ACGT	3 cut(s)	490, 652, 702
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	40, 100, 763
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	792
Kzo9I	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	86, 178
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	345, 392
MaeI	CTAG	3 cut(s)	198, 252, 831
MaeII	ACGT	3 cut(s)	490, 652, 702
MalI	GATC	7 cut(s)	300, 483, 555, 804, 839, 853, 857
MboI	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
MflI	RGATCY	3 cut(s)	298, 481, 837
MhlI	GDGCHC	5 cut(s)	83, 217, 226, 658, 721
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	455
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	281, 791
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	9 cut(s)	93, 221, 425, 458, 494, 527, 662, 671, 725
NcoI	CCATGG	2 cut(s)	36, 759
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
NlaIII	CATG	3 cut(s)	40, 100, 763
NlaIV	GGNNCC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	232, 764
PflMI	CCANNNNNTGG	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	418
Ple19I	CGATCG	1 cut(s)	854
PmaCI	CACGTG	2 cut(s)	491, 653
PmlI	CACGTG	2 cut(s)	491, 653
Ppu21I	YACGTR	2 cut(s)	491, 653
PshBI	ATTAAT	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	83
PspCI	CACGTG	2 cut(s)	491, 653
PspN4I	GGNNCC	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	298, 481, 837
PvuI	CGATCG	1 cut(s)	854
RsaI	GTAC	3 cut(s)	289, 410, 443
RsaNI	GTAC	3 cut(s)	288, 409, 442
SacI	GAGCTC	1 cut(s)	83
SalI	GTCGAC	2 cut(s)	183, 846
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	281, 791
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	7 cut(s)	298, 481, 553, 802, 837, 851, 855
SduI	GDGCHC	5 cut(s)	83, 217, 226, 658, 721
SfaNI	GCATC	2 cut(s)	345, 392
Sse9I	AATT	1 cut(s)	455
SsiI	CCGC	4 cut(s)	87, 135, 394, 445
SspMI	CTAG	3 cut(s)	198, 252, 831
SstI	GAGCTC	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	36, 759
TaiI	ACGT	3 cut(s)	493, 655, 705
TaqI	TCGA	7 cut(s)	44, 77, 184, 573, 629, 847, 854
TaqII	GACCGA	1 cut(s)	833
TasI	AATT	1 cut(s)	455
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	232, 764
Tru1I	TTAA	2 cut(s)	281, 791
Tru9I	TTAA	2 cut(s)	281, 791
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	245, 350
TspGWI	ACGGA	1 cut(s)	812
Van91I	CCANNNNNTGG	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	184, 847
XspI	CTAG	3 cut(s)	198, 252, 831
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.