Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

16083513 .. 16090037

Gene Structure 6525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGCACATTTTTCCTTTCACAAATACAAAAATTATTGTGGTGCTTTTTCTAATTACGAAGAAATTACAGAGTCCACGTGGCGTCTTCCATCGCACGCAAAACCCTATATTTGCAAGCGGCTCTCAGCCGTTTCAGAAATCAAAACCACCGAAAACTCCATCGGTGTCAGCTCAGCGCCCTCCATCCCTCGATTGCTTCCTCTGCAAAAACCCACAAAAATTAGTAAACCAATCGCAAATGGCGGCCGTTGAAGAAATAGGAGAGAAGGAGAAAGCAGCTCCCGAGGCAAAACCAGAAGCGGAGGAGGAAGAAGTGGAAGAAGACGAAGAGGATGAGGAGCTTTGGACGTCGGACTCCGACGTCGGAGATGCGTTGGACTATTTGGACTCCAAGGACGACGACAGAGGAGTAGAAGGCGGCTTCACCATCAATTCACGGCGGCCCAATGCCCACGGCGGCCTTCACTCCCGCCCTGCTTCCTCGACCCTTCAGCCTCTCGCTAATCGCAACCAGAAGTTCACCACCCACATCCGAGCTTCGCCTCTGGAGGAGTGGGAAGGGAGGTTTAACGTTGGAATGTCCAACTCCGTGACCACTGCCATTCGGGGAAGTGTTCGGGACATGGCCATTGGCAGAACGAAAACTACTGAGAAAGCGGACCGTGCCACTGTTGAGCAGGCCATTGATCCTAGAACTCGGATGGTTTTATTCAAAATGTTGAATAGTGGCGTGTTTCATGATATCAATGGCTGCATTTCTACCGGGAAAGAAGCAAACGTGTATCACGCAACAAAATCTGATGGCCAGGAAATGGCGATCAAAGTGTTCAAAACATCTATTCTGGTTTTCAAGGACAGGGATAGATACGTACAAGGGGATTACAGATTCAGACATGGATATTGCAAGCGCAATCCTAGGAAAATGGTGCAGACTTGGGCTGAGAAAGAAATGAGGAATTTAAAGAGGCTAAAGGACAATGGAATTAGGTGCCCATCTACGGTTATTTTAAGACTTCATGTTCTGGTCATGGAATTCATAGGGAAGTCGGGTTGGGCAGCACCTCGTCTAAAGGATGCTGCATTATCACTAGACAAGCTACGAGAAGGTTATATGGAGATGATTATTGCTATGCGAACAATGTATCAGAAGAGCAAACTGGTGCATGGAGACCTTAGTGAATACAACATACTTTACTTTGAGGGTCACTTGTACATTATTGATGTTTCTCAAGCAGTTGATCTGGACCACCCTCATGCCCTTGATTTCCTACGTGAAGATTGCGTCCATGTATCTGATTTCTTTAAGAAACATGGTGTGGCTGTTATGACAATTCGAGAGCTCTTTGATTTTATAGTTGATCCAACTATTGCTGATGATGCAGTGGAGAGTTATCTTGATATGGTACAACAAAAGGTTACGGCAAGAGGAGATATATCTGCAGAGGAGGAAATTGCAGACTCTGTATTTGTACAGTCGTACATTCCAAAGACATTAGATGACGTGAAGAATGCTGAGCGGGATGTAATACGGTTAACTAGCGGAGAGGACACTGGAGACATGTACTATAAAACTATTACAGGACTGAAGGAGGCTCTTCCTCAAGGTCAACCAGATTCATCTGAGAAAGGGCAGAAACAGGATGATGCTACTTCTGTAGCAGATCCCTCTGCAAATCCCGAAACTGAATCTGACTCTGACACAGATGACGACAACTCAAGTGACTCGGAAGGGCGGAGCTCCTCTTCCGAAACCAAGGCACAGGATCCTCTCGAAAAGAAAGCTGCTAGGAAAGAGAACAAAAAGAAAGTGAAGGAAGAGAAGAGGGAGGCTCGGAAAACTAAAGTGCCGAAGGCTCTGAAGAAACGAAAGAAAAAGATAGCCAAAGCACACAAGACCAGGTCACACATTTGTGTTGCTAAACCACCATCTCGAAAACGACGTCGTTGCTGCCCCCTTGTTTTAATTGTATCAGCAGTTCACAGAAAGCTGCAAAATTCGCAGCACTGTCAGCTTTCCGCTCTCTCCTCCTCCTCTTCCTCCTCCTTCGCGGGGAGCAAAATGTCGAACTCCGGAGACCAAACCCTAGCCACGACACCACCAGCACCACCGCCAGCGGCAACCGAAGAAGAAGAAGCGGTGGCAGAACAGAGAGTCTCCGACAACGACAACGCCAGCGAGCAGTCCTCCCAGGAGTGGGAGACCATGGCCCGAGCTTGGCTCTGCTCGTTCCCCGAGGCCAAAGCTGTCTCCATGGACGAGGTCGAAGCCTGGATCGACTCCAACTTCGATTTCATACCCCAAGGCATCAAGTCCATGCCCCGCGGCGACCTCTGCCACCGCCTCATTGCCATCCAGAATTGCATGCGACTCCCCAACCAGGACCCACATTCTCCAATTCAGGAAGGAAAGGAAGAAAACCAGGGTGATATTCCACATGCTCGATTTAAGCGCACCGATCAATGGAGACCGGCTTATATTTGGTTAGAATCGTTGGAGAAAGATGACGTGGTTAAGTCCAAGGATATAGCCGACTGGCTAACTGAGAACCCGGACATCCAAGCAGAGTTGTGCTCTAGGCATTCTAAGTATCATTTGATGCACTATATCAAGAAGTGCCATATGAAGATACTGAAGAGGCGGGAAAAGAAGAAGGGTATCAAGCAGCCTGACAAATCAGCCTCTCTAAAGGTTCACAAAGATGTGGTGATGAAACAACAAGCTTCGCTGCCATCTCCACTCTCTGTATGCAATGCATTGATCAATGCACCTAAAGATGGTGATGCATATGTGATGAAACGAAAGGAAGCAATCCAGAAATATGAGATATTAGTGGAGCTGGAGAAGCTGCTCGCCCCCACCTTTTTAAGGCGTGAAGTTGCAAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

963

Amino Acids

108.57

Weight (kDa)

7.98

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	259 - 446	3.6e-71	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AatII	GACGTC	3 cut(s)	350, 363, 1942
AccB1I	GGYRCC	1 cut(s)	987
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccBSI	CCGCTC	2 cut(s)	1516, 2018
AccII	CGCG	2 cut(s)	2048, 2322
AccIII	TCCGGA	1 cut(s)	2069
AclI	AACGTT	1 cut(s)	570
AclWI	GGATC	6 cut(s)	680, 1352, 1655, 1757, 1770, 2279
AcoI	YGGCCR	3 cut(s)	243, 624, 802
AcsI	RAATTY	3 cut(s)	955, 1031, 1993
AcuI	CTGAAG	4 cut(s)	473, 1604, 1877, 2651
AcvI	CACGTG	1 cut(s)	77
AcyI	GRCGYC	4 cut(s)	81, 347, 360, 1939
AfaI	GTAC	6 cut(s)	870, 1211, 1404, 1470, 1478, 1562
AflIII	ACRYGT	2 cut(s)	777, 1557
AgsI	TTSAA	5 cut(s)	251, 712, 721, 829, 850
AjiI	CACGTC	2 cut(s)	1501, 2506
AjnI	CCWGG	6 cut(s)	804, 1895, 2187, 2267, 2376, 2418
AjuI	GAANNNNNNNTTGG	2 cut(s)	2273, 2305
AleI	CACNNNNGTG	1 cut(s)	1908
Alw21I	GWGCWC	3 cut(s)	1341, 1739, 2573
Alw26I	GTCTC	7 cut(s)	1161, 1548, 2067, 2158, 2192, 2251, 2458
AlwI	GGATC	6 cut(s)	680, 1352, 1655, 1757, 1770, 2279
AlwNI	CAGNNNCTG	1 cut(s)	1460
Ama87I	CYCGRG	3 cut(s)	281, 2208, 2231
Aor13HI	TCCGGA	1 cut(s)	2069
AoxI	GGCC	8 cut(s)	243, 440, 457, 624, 678, 802, 2205, 2235
ApoI	RAATTY	3 cut(s)	955, 1031, 1993
ArsI	GACNNNNNNTTYG	6 cut(s)	1448, 1480, 1924, 1956, 2267, 2299
AspA2I	CCTAGG	1 cut(s)	914
AspLEI	GCGC	3 cut(s)	177, 909, 2451
AspS9I	GGNCC	5 cut(s)	441, 658, 1243, 2206, 2380
AsuC2I	CCSGG	2 cut(s)	763, 2549
AsuHPI	GGTGA	5 cut(s)	415, 511, 2435, 2716, 2789
AvaI	CYCGRG	3 cut(s)	281, 2208, 2231
AvaII	GGWCC	3 cut(s)	658, 1243, 2380
AvrII	CCTAGG	1 cut(s)	914
BaeGI	GKGCMC	1 cut(s)	992
BalI	TGGCCA	2 cut(s)	626, 804
BamHI	GGATCC	1 cut(s)	1762
BanI	GGYRCC	1 cut(s)	987
BanII	GRGCYC	2 cut(s)	1341, 1739
BbrPI	CACGTG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	76, 327
Bbv12I	GWGCWC	3 cut(s)	1341, 1739, 2573
BceAI	ACGGC	5 cut(s)	112, 230, 452, 469, 1434
BcgI	CGANNNNNNTGC	2 cut(s)	1926, 1960
BciT130I	CCWGG	6 cut(s)	806, 1897, 2189, 2269, 2378, 2420
BclI	TGATCA	1 cut(s)	2757
BcnI	CCSGG	2 cut(s)	763, 2549
BcoDI	GTCTC	7 cut(s)	1161, 1548, 2067, 2158, 2192, 2251, 2458
BfaI	CTAG	7 cut(s)	690, 915, 1088, 1536, 1785, 2084, 2574
BfmI	CTRYAG	2 cut(s)	1437, 1653
BfoI	RGCGCY	1 cut(s)	178
BlnI	CCTAGG	1 cut(s)	914
BlpI	GCTNAGC	2 cut(s)	171, 1512
Bme1390I	CCNGG	8 cut(s)	763, 806, 1897, 2189, 2269, 2378, 2420, 2549
Bme18I	GGWCC	3 cut(s)	658, 1243, 2380
BmeT110I	CYCGRG	3 cut(s)	281, 2208, 2231
BmgBI	CACGTC	2 cut(s)	1501, 2506
BmgT120I	GGNCC	5 cut(s)	441, 658, 1243, 2206, 2380
BmiI	GGNNCC	3 cut(s)	989, 1764, 2382
BmrFI	CCNGG	8 cut(s)	763, 806, 1897, 2189, 2269, 2378, 2420, 2549
BmsI	GCATC	7 cut(s)	358, 1063, 1366, 1633, 2313, 2586, 2770
BpiI	GAAGAC	2 cut(s)	76, 327
BplI	GAGNNNNNCTC	8 cut(s)	1813, 1845, 2168, 2200, 2202, 2234, 2555, 2587
BpmI	CTGGAG	3 cut(s)	566, 1572, 2858
Bpu1102I	GCTNAGC	2 cut(s)	171, 1512
BpuEI	CTTGAG	3 cut(s)	1212, 1584, 1699
BpuMI	CCSGG	2 cut(s)	763, 2549
BsaAI	YACGTR	3 cut(s)	77, 868, 1271
BsaHI	GRCGYC	4 cut(s)	81, 347, 360, 1939
BsaI	GGTCTC	4 cut(s)	1161, 2067, 2192, 2458
BsaWI	WCCGGW	1 cut(s)	2069
Bse118I	RCCGGY	1 cut(s)	2467
Bse1I	ACTGG	3 cut(s)	1161, 1555, 2537
Bse3DI	GCAATG	2 cut(s)	2343, 2755
BseAI	TCCGGA	1 cut(s)	2069
BseBI	CCWGG	6 cut(s)	806, 1897, 2189, 2269, 2378, 2420
BseGI	GGATG	9 cut(s)	182, 337, 528, 705, 1078, 1525, 1645, 2349, 2553
BseMI	GCAATG	2 cut(s)	2343, 2755
BseMII	CTCAG	7 cut(s)	137, 185, 639, 930, 1503, 1611, 2532
BseNI	ACTGG	3 cut(s)	1161, 1555, 2537
BseSI	GKGCMC	1 cut(s)	992
BseX3I	CGGCCG	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	2 cut(s)	2048, 2322
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	8 cut(s)	245, 442, 459, 626, 680, 804, 2207, 2237
BshNI	GGYRCC	1 cut(s)	987
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	1341, 1739, 2573
BsiHKCI	CYCGRG	3 cut(s)	281, 2208, 2231
BsiSI	CCGG	4 cut(s)	762, 2070, 2468, 2549
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	7 cut(s)	1161, 1548, 2067, 2158, 2192, 2251, 2458
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	2 cut(s)	1513, 2578
BsnI	GGCC	8 cut(s)	245, 442, 459, 626, 680, 804, 2207, 2237
Bso31I	GGTCTC	4 cut(s)	1161, 2067, 2192, 2458
BsoBI	CYCGRG	3 cut(s)	281, 2208, 2231
Bsp1286I	GDGCHC	4 cut(s)	992, 1341, 1739, 2573
Bsp13I	TCCGGA	1 cut(s)	2069
Bsp1407I	TGTACA	2 cut(s)	1209, 1468
Bsp143I	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
Bsp1720I	GCTNAGC	2 cut(s)	171, 1512
Bsp19I	CCATGG	2 cut(s)	2202, 2250
BspANI	GGCC	8 cut(s)	245, 442, 459, 626, 680, 804, 2207, 2237
BspCNI	CTCAG	7 cut(s)	136, 184, 640, 931, 1504, 1612, 2533
BspEI	TCCGGA	1 cut(s)	2069
BspFNI	CGCG	2 cut(s)	2048, 2322
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	989, 1764, 2382
BspMAI	CTGCAG	1 cut(s)	1441
BspPI	GGATC	6 cut(s)	680, 1352, 1655, 1757, 1770, 2279
BspQI	GCTCTTC	2 cut(s)	1142, 1599
BspT107I	GGYRCC	1 cut(s)	987
BspTNI	GGTCTC	4 cut(s)	1161, 2067, 2192, 2458
BsrBI	CCGCTC	2 cut(s)	1516, 2018
BsrDI	GCAATG	2 cut(s)	2343, 2755
BsrFI	RCCGGY	1 cut(s)	2467
BsrGI	TGTACA	2 cut(s)	1209, 1468
BsrI	ACTGG	3 cut(s)	1161, 1555, 2537
BssAI	RCCGGY	1 cut(s)	2467
BssMI	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
BssNI	GRCGYC	4 cut(s)	81, 347, 360, 1939
BssT1I	CCWWGG	7 cut(s)	390, 914, 1752, 2202, 2250, 2299, 2517
Bst2UI	CCWGG	6 cut(s)	806, 1897, 2189, 2269, 2378, 2420
Bst4CI	ACNGT	6 cut(s)	662, 670, 1000, 1473, 1530, 2006
Bst6I	CTCTTC	8 cut(s)	321, 1142, 1599, 1747, 1809, 1814, 2038, 2627
BstACI	GRCGYC	4 cut(s)	81, 347, 360, 1939
BstAUI	TGTACA	2 cut(s)	1209, 1468
BstBAI	YACGTR	3 cut(s)	77, 868, 1271
BstC8I	GCNNGC	9 cut(s)	95, 115, 678, 905, 2112, 2173, 2177, 2363, 2850
BstDEI	CTNAG	9 cut(s)	123, 171, 648, 939, 1172, 1512, 1620, 2541, 2583
BstDSI	CCRYGG	4 cut(s)	451, 2202, 2250, 2320
BstENI	CCTNNNNNAGG	1 cut(s)	2863
BstF5I	GGATG	9 cut(s)	182, 337, 528, 705, 1078, 1525, 1645, 2349, 2553
BstFNI	CGCG	2 cut(s)	2048, 2322
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	3 cut(s)	177, 909, 2451
BstKTI	GATC	9 cut(s)	688, 819, 1240, 1360, 1663, 1765, 2274, 2458, 2760
BstMAI	GTCTC	7 cut(s)	1161, 1548, 2067, 2158, 2192, 2251, 2458
BstMBI	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	8 cut(s)	201, 284, 662, 1376, 1996, 2008, 2331, 2842
BstNI	CCWGG	6 cut(s)	806, 1897, 2189, 2269, 2378, 2420
BstNSI	RCATGY	3 cut(s)	1561, 2365, 2438
BstSCI	CCNGG	8 cut(s)	761, 804, 1895, 2187, 2267, 2376, 2418, 2547
BstSFI	CTRYAG	2 cut(s)	1437, 1653
BstSLI	GKGCMC	1 cut(s)	992
BstSNI	TACGTA	1 cut(s)	868
BstUI	CGCG	2 cut(s)	2048, 2322
BstV2I	GAAGAC	2 cut(s)	76, 327
BstX2I	RGATCY	2 cut(s)	1660, 1762
BstYI	RGATCY	2 cut(s)	1660, 1762
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	8 cut(s)	245, 442, 459, 626, 680, 804, 2207, 2237
BtgI	CCRYGG	4 cut(s)	451, 2202, 2250, 2320
BtgZI	GCGATG	1 cut(s)	74
BtrI	CACGTC	2 cut(s)	1501, 2506
BtsCI	GGATG	9 cut(s)	182, 337, 528, 705, 1078, 1525, 1645, 2349, 2553
BtsI	GCAGTG	2 cut(s)	594, 1386
BtsIMutI	CAGTG	5 cut(s)	594, 666, 1386, 1548, 2002
Cac8I	GCNNGC	9 cut(s)	95, 115, 678, 905, 2112, 2173, 2177, 2363, 2850
CaiI	CAGNNNCTG	1 cut(s)	1460
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	3 cut(s)	177, 909, 2451
Cfr10I	RCCGGY	1 cut(s)	2467
Cfr13I	GGNCC	5 cut(s)	441, 658, 1243, 2206, 2380
Cfr42I	CCGCGG	1 cut(s)	2323
CpoI	CGGWCCG	1 cut(s)	658
CseI	GACGC	2 cut(s)	70, 1270
CsiI	ACCWGGT	1 cut(s)	1895
Csp6I	GTAC	6 cut(s)	869, 1210, 1403, 1469, 1477, 1561
CspI	CGGWCCG	1 cut(s)	658
CviQI	GTAC	6 cut(s)	869, 1210, 1403, 1469, 1477, 1561
DdeI	CTNAG	9 cut(s)	123, 171, 648, 939, 1172, 1512, 1620, 2541, 2583
DpnI	GATC	9 cut(s)	687, 818, 1239, 1359, 1662, 1764, 2273, 2457, 2759
DpnII	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
DraI	TTTAAA	1 cut(s)	960
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	3 cut(s)	243, 624, 802
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	8 cut(s)	321, 1142, 1599, 1747, 1809, 1814, 2038, 2627
EarI	CTCTTC	8 cut(s)	321, 1142, 1599, 1747, 1809, 1814, 2038, 2627
EciI	GGCGGA	1 cut(s)	1747
Ecl136II	GAGCTC	2 cut(s)	1339, 1737
EclXI	CGGCCG	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	868
Eco130I	CCWWGG	7 cut(s)	390, 914, 1752, 2202, 2250, 2299, 2517
Eco24I	GRGCYC	2 cut(s)	1341, 1739
Eco31I	GGTCTC	4 cut(s)	1161, 2067, 2192, 2458
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	3 cut(s)	658, 1243, 2380
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	2 cut(s)	1339, 1737
Eco57I	CTGAAG	4 cut(s)	473, 1604, 1877, 2651
Eco72I	CACGTG	1 cut(s)	77
Eco88I	CYCGRG	3 cut(s)	281, 2208, 2231
EcoICRI	GAGCTC	2 cut(s)	1339, 1737
EcoNI	CCTNNNNNAGG	1 cut(s)	2863
EcoO109I	RGGNCCY	1 cut(s)	2380
EcoRI	GAATTC	1 cut(s)	1031
EcoRII	CCWGG	6 cut(s)	804, 1895, 2187, 2267, 2376, 2418
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	7 cut(s)	390, 914, 1752, 2202, 2250, 2299, 2517
EcoT22I	ATGCAT	2 cut(s)	2755, 2785
EcoT38I	GRGCYC	2 cut(s)	1341, 1739
ErhI	CCWWGG	7 cut(s)	390, 914, 1752, 2202, 2250, 2299, 2517
FaqI	GGGAC	1 cut(s)	632
FauI	CCCGC	5 cut(s)	476, 1509, 2041, 2327, 2631
FauNDI	CATATG	2 cut(s)	2619, 2785
FbaI	TGATCA	1 cut(s)	2757
FokI	GGATG	9 cut(s)	169, 344, 515, 712, 1085, 1532, 1652, 2336, 2540
FriOI	GRGCYC	2 cut(s)	1341, 1739
FspBI	CTAG	7 cut(s)	690, 915, 1088, 1536, 1785, 2084, 2574
GlaI	GCGC	3 cut(s)	176, 908, 2450
GsuI	CTGGAG	3 cut(s)	566, 1572, 2858
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	8 cut(s)	245, 442, 459, 626, 680, 804, 2207, 2237
HapII	CCGG	4 cut(s)	762, 2070, 2468, 2549
HgaI	GACGC	2 cut(s)	70, 1270
HhaI	GCGC	3 cut(s)	177, 909, 2451
Hin1I	GRCGYC	4 cut(s)	81, 347, 360, 1939
Hin6I	GCGC	3 cut(s)	175, 907, 2449
HinP1I	GCGC	3 cut(s)	175, 907, 2449
HincII	GTYRAC	2 cut(s)	1533, 1607
HindII	GTYRAC	2 cut(s)	1533, 1607
HindIII	AAGCTT	1 cut(s)	2718
HpaI	GTTAAC	1 cut(s)	1533
HpaII	CCGG	4 cut(s)	762, 2070, 2468, 2549
HphI	GGTGA	5 cut(s)	415, 511, 2435, 2716, 2789
Hpy166II	GTNNAC	7 cut(s)	74, 226, 519, 1533, 1607, 1978, 2692
Hpy8I	GTNNAC	7 cut(s)	74, 226, 519, 1533, 1607, 1978, 2692
Hpy99I	CGWCG	6 cut(s)	352, 362, 365, 401, 1941, 1944
HpyCH4III	ACNGT	6 cut(s)	662, 670, 1000, 1473, 1530, 2006
HpyF10VI	GCNNNNNNNGC	8 cut(s)	201, 284, 662, 1376, 1996, 2008, 2331, 2842
HpyF3I	CTNAG	9 cut(s)	123, 171, 648, 939, 1172, 1512, 1620, 2541, 2583
Hsp92I	GRCGYC	4 cut(s)	81, 347, 360, 1939
HspAI	GCGC	3 cut(s)	175, 907, 2449
Kpn2I	TCCGGA	1 cut(s)	2069
Ksp22I	TGATCA	1 cut(s)	2757
KspAI	GTTAAC	1 cut(s)	1533
KspI	CCGCGG	1 cut(s)	2323
Kzo9I	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
LguI	GCTCTTC	2 cut(s)	1142, 1599
LmnI	GCTCC	6 cut(s)	283, 337, 1734, 1742, 2052, 2833
LweI	GCATC	7 cut(s)	358, 1063, 1366, 1633, 2313, 2586, 2770
MabI	ACCWGGT	1 cut(s)	1895
MaeI	CTAG	7 cut(s)	690, 915, 1088, 1536, 1785, 2084, 2574
MaeIII	GTNAC	5 cut(s)	589, 1202, 1414, 1718, 1899
MalI	GATC	9 cut(s)	687, 818, 1239, 1359, 1662, 1764, 2273, 2457, 2759
MbiI	CCGCTC	2 cut(s)	1516, 2018
MboI	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
MflI	RGATCY	2 cut(s)	1660, 1762
MhlI	GDGCHC	4 cut(s)	992, 1341, 1739, 2573
MlsI	TGGCCA	2 cut(s)	626, 804
MluNI	TGGCCA	2 cut(s)	626, 804
MlyI	GAGTC	9 cut(s)	79, 347, 380, 1451, 1685, 1715, 2160, 2270, 2361
Mox20I	TGGCCA	2 cut(s)	626, 804
Mph1103I	ATGCAT	2 cut(s)	2755, 2785
MroI	TCCGGA	1 cut(s)	2069
MscI	TGGCCA	2 cut(s)	626, 804
MseI	TTAA	9 cut(s)	567, 959, 1007, 1302, 1532, 1961, 2445, 2511, 2864
MslI	CAYNNNNRTG	3 cut(s)	1251, 1908, 2697
Msp20I	TGGCCA	2 cut(s)	626, 804
MspA1I	CMGCKG	2 cut(s)	2114, 2322
MspI	CCGG	4 cut(s)	762, 2070, 2468, 2549
MspR9I	CCNGG	8 cut(s)	763, 806, 1897, 2189, 2269, 2378, 2420, 2549
Mva1269I	GAATGC	2 cut(s)	1513, 2578
MvaI	CCWGG	6 cut(s)	806, 1897, 2189, 2269, 2378, 2420
MvnI	CGCG	2 cut(s)	2048, 2322
MwoI	GCNNNNNNNGC	8 cut(s)	201, 284, 662, 1376, 1996, 2008, 2331, 2842
NciI	CCSGG	2 cut(s)	763, 2549
NcoI	CCATGG	2 cut(s)	2202, 2250
NdeI	CATATG	2 cut(s)	2619, 2785
NdeII	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
NlaIV	GGNNCC	3 cut(s)	989, 1764, 2382
NmuCI	GTSAC	4 cut(s)	589, 1202, 1718, 1899
NsiI	ATGCAT	2 cut(s)	2755, 2785
NspI	RCATGY	3 cut(s)	1561, 2365, 2438
OliI	CACNNNNGTG	1 cut(s)	1908
PaeI	GCATGC	1 cut(s)	2365
PagI	TCATGA	1 cut(s)	736
PciI	ACATGT	1 cut(s)	1557
PciSI	GCTCTTC	2 cut(s)	1142, 1599
PcsI	WCGNNNNNNNCGW	1 cut(s)	1936
PctI	GAATGC	2 cut(s)	1513, 2578
PfeI	GAWTC	4 cut(s)	885, 1613, 1685, 2486
PflFI	GACNNNGTC	2 cut(s)	1897, 2258
PflMI	CCANNNNNTGG	1 cut(s)	811
PleI	GAGTC	9 cut(s)	78, 347, 380, 1451, 1685, 1715, 2159, 2270, 2361
PmaCI	CACGTG	1 cut(s)	77
PmlI	CACGTG	1 cut(s)	77
PpsI	GAGTC	9 cut(s)	78, 347, 380, 1451, 1685, 1715, 2159, 2270, 2361
Ppu21I	YACGTR	3 cut(s)	77, 868, 1271
PpuMI	RGGWCCY	1 cut(s)	2380
PscI	ACATGT	1 cut(s)	1557
Psp124BI	GAGCTC	2 cut(s)	1341, 1739
Psp1406I	AACGTT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	2380
Psp6I	CCWGG	6 cut(s)	804, 1895, 2187, 2267, 2376, 2418
PspCI	CACGTG	1 cut(s)	77
PspGI	CCWGG	6 cut(s)	804, 1895, 2187, 2267, 2376, 2418
PspN4I	GGNNCC	3 cut(s)	989, 1764, 2382
PspPI	GGNCC	5 cut(s)	441, 658, 1243, 2206, 2380
PspPPI	RGGWCCY	1 cut(s)	2380
PsrI	GAACNNNNNNTAC	4 cut(s)	628, 660, 1959, 1991
PstI	CTGCAG	1 cut(s)	1441
PstNI	CAGNNNCTG	1 cut(s)	1460
PsuI	RGATCY	2 cut(s)	1660, 1762
PsyI	GACNNNGTC	2 cut(s)	1897, 2258
RsaI	GTAC	6 cut(s)	870, 1211, 1404, 1470, 1478, 1562
RsaNI	GTAC	6 cut(s)	869, 1210, 1403, 1469, 1477, 1561
RseI	CAYNNNNRTG	3 cut(s)	1251, 1908, 2697
Rsr2I	CGGWCCG	1 cut(s)	658
RsrII	CGGWCCG	1 cut(s)	658
SacI	GAGCTC	2 cut(s)	1341, 1739
SacII	CCGCGG	1 cut(s)	2323
SapI	GCTCTTC	2 cut(s)	1142, 1599
SaqAI	TTAA	9 cut(s)	567, 959, 1007, 1302, 1532, 1961, 2445, 2511, 2864
Sau3AI	GATC	9 cut(s)	685, 816, 1237, 1357, 1660, 1762, 2271, 2455, 2757
Sau96I	GGNCC	5 cut(s)	441, 658, 1243, 2206, 2380
SchI	GAGTC	9 cut(s)	79, 347, 380, 1451, 1685, 1715, 2160, 2270, 2361
ScrFI	CCNGG	8 cut(s)	763, 806, 1897, 2189, 2269, 2378, 2420, 2549
SduI	GDGCHC	4 cut(s)	992, 1341, 1739, 2573
SexAI	ACCWGGT	1 cut(s)	1895
SfaNI	GCATC	7 cut(s)	358, 1063, 1366, 1633, 2313, 2586, 2770
SfcI	CTRYAG	2 cut(s)	1437, 1653
Sfr303I	CCGCGG	1 cut(s)	2323
SgrBI	CCGCGG	1 cut(s)	2323
SinI	GGWCC	3 cut(s)	658, 1243, 2380
SmiMI	CAYNNNNRTG	3 cut(s)	1251, 1908, 2697
SmlI	CTYRAG	3 cut(s)	1227, 1599, 1714
SmoI	CTYRAG	3 cut(s)	1227, 1599, 1714
SnaBI	TACGTA	1 cut(s)	868
SphI	GCATGC	1 cut(s)	2365
SspMI	CTAG	7 cut(s)	690, 915, 1088, 1536, 1785, 2084, 2574
SstI	GAGCTC	2 cut(s)	1341, 1739
StyD4I	CCNGG	8 cut(s)	761, 804, 1895, 2187, 2267, 2376, 2418, 2547
StyI	CCWWGG	7 cut(s)	390, 914, 1752, 2202, 2250, 2299, 2517
TaaI	ACNGT	6 cut(s)	662, 670, 1000, 1473, 1530, 2006
TatI	WGTACW	3 cut(s)	1209, 1468, 1560
TauI	GCSGC	7 cut(s)	120, 245, 420, 442, 459, 2117, 2325
TfiI	GAWTC	4 cut(s)	885, 1613, 1685, 2486
Tru1I	TTAA	9 cut(s)	567, 959, 1007, 1302, 1532, 1961, 2445, 2511, 2864
Tru9I	TTAA	9 cut(s)	567, 959, 1007, 1302, 1532, 1961, 2445, 2511, 2864
TscAI	CASTG	5 cut(s)	601, 673, 1386, 1555, 2009
TseFI	GTSAC	4 cut(s)	589, 1202, 1718, 1899
Tsp45I	GTSAC	4 cut(s)	589, 1202, 1718, 1899
TspDTI	ATGAA	8 cut(s)	725, 1004, 1024, 1605, 2281, 2636, 2723, 2807
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	5 cut(s)	601, 673, 1386, 1555, 2009
Tth111I	GACNNNGTC	2 cut(s)	1897, 2258
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	3 cut(s)	658, 1243, 2380
XagI	CCTNNNNNAGG	1 cut(s)	2863
XapI	RAATTY	3 cut(s)	955, 1031, 1993
XceI	RCATGY	3 cut(s)	1561, 2365, 2438
XmaJI	CCTAGG	1 cut(s)	914
XspI	CTAG	7 cut(s)	690, 915, 1088, 1536, 1785, 2084, 2574
ZraI	GACGTC	3 cut(s)	348, 361, 1940
Zsp2I	ATGCAT	2 cut(s)	2755, 2785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.