Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

12075786 .. 12077008

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTATTTCTTTGGAGCATGATTACATAGGCTTATCTCCTTCAATGGAAACCTCTGACAAGTCTGCTGCTTTGAACCTCAAGGCCACTGAGCTGAGACTGGGCTTGCCTGGCTCCCAGTCCCCAGAGAGAGACAGCGGCGGCGGCGGCGGCGGCGGGGTGGAGGAGAAAGCTGCTGGGTTTTCAGCATGTGGGGTTAAGGGGTTGGTGTCTGGGGCCAAGAGGGGATTCTCAGACGCCATTGATGGAGCTTCTGGAAAGTGGGTTTTCTCTGGGAGTGATCGATCTGAGGTGGAGTTGGGAAAAGGTGGAAACTTGCTTTCTCCTAGAGGTGTGCATGCTGGGAAAACTCTTGCTGCTGGGAGTGAACCCAGCAAGCAACCAACTGGTTTAGCTGGGTCTACTGTGAAAGATGGTGTCCAACAGTCTCCAAAGCCATTGCATGAGAAGAAACCCCAAGGGTCTGCTGGGTCTACTGCCCCTGCTGCAAAGGCACAGGTTGTAGGATGGCCACCAATTCGTTCTTTCCGGAAAAATTCAATGGCTTCCGTTCCTTCGAAAAATGATGATGAAGCTGAAGGCAAGATGGGAGCAGGGTGTCTATATGTTAAGGTCAGCATGGATGGTGCACCGTACCTGAGGAAAGTTGATCGATCAAAACCTACGGTAGCTATCTGGAGTTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

230

Amino Acids

23.43

Weight (kDa)

9.26

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	29 - 217	6.6e-32	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	401, 473
AccIII	TCCGGA	1 cut(s)	528
AciI	CCGC	7 cut(s)	138, 141, 144, 147, 150, 153, 156
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	45, 76, 540
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	6 cut(s)	94, 173, 251, 395, 575, 671
AluI	AGCT	6 cut(s)	94, 173, 251, 395, 575, 671
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	3 cut(s)	91, 126, 432
Alw44I	GTGCAC	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	528
AoxI	GGCC	3 cut(s)	84, 216, 509
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	4 cut(s)	68, 173, 356, 485
ApoI	RAATTY	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	4 cut(s)	55, 160, 343, 472
BccI	CCATC	5 cut(s)	239, 407, 501, 580, 617
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	91, 126, 432
BfaI	CTAG	2 cut(s)	327, 688
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	115, 217
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	2 cut(s)	110, 112
BmuI	ACTGGG	2 cut(s)	110, 112
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	2 cut(s)	283, 652
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	528
Bse1I	ACTGG	3 cut(s)	105, 118, 391
Bse21I	CCTNAGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	437
BseAI	TCCGGA	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	111
BseCI	ATCGAT	2 cut(s)	283, 652
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	2 cut(s)	512, 628
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	5 cut(s)	81, 86, 246, 279, 629
BseNI	ACTGG	3 cut(s)	105, 118, 391
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	4 cut(s)	55, 160, 343, 472
BseYI	CCCAGC	6 cut(s)	176, 341, 359, 371, 395, 467
BshFI	GGCC	3 cut(s)	86, 218, 511
BshVI	ATCGAT	2 cut(s)	283, 652
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	91, 126, 432
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	86, 218, 511
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp13I	TCCGGA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	280, 284, 649, 653
BspACI	CCGC	7 cut(s)	138, 141, 144, 147, 150, 153, 156
BspANI	GGCC	3 cut(s)	86, 218, 511
BspCNI	CTCAG	5 cut(s)	82, 87, 245, 280, 630
BspDI	ATCGAT	2 cut(s)	283, 652
BspEI	TCCGGA	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	115, 217
BspT104I	TTCGAA	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	105, 118, 391
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	4 cut(s)	280, 284, 649, 653
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	4 cut(s)	406, 426, 633, 667
BstACI	GRCGYC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	107, 339, 377
BstDEI	CTNAG	5 cut(s)	90, 95, 232, 288, 638
BstF5I	GGATG	2 cut(s)	512, 628
BstKTI	GATC	4 cut(s)	283, 287, 652, 656
BstMAI	GTCTC	3 cut(s)	91, 126, 432
BstMBI	GATC	4 cut(s)	280, 284, 649, 653
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 144, 147, 150, 153, 485, 491
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	192, 341
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	4 cut(s)	55, 160, 343, 472
Bsu15I	ATCGAT	2 cut(s)	283, 652
Bsu36I	CCTNAGG	1 cut(s)	638
BsuRI	GGCC	3 cut(s)	86, 218, 511
BsuTUI	ATCGAT	2 cut(s)	283, 652
BtsCI	GGATG	2 cut(s)	512, 628
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	107, 339, 377
Cfr13I	GGNCC	1 cut(s)	216
ClaI	ATCGAT	2 cut(s)	283, 652
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	5 cut(s)	20, 189, 338, 443, 619
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	5 cut(s)	90, 95, 232, 288, 638
DpnI	GATC	4 cut(s)	282, 286, 651, 655
DpnII	GATC	4 cut(s)	280, 284, 649, 653
EaeI	YGGCCR	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	5 cut(s)	23, 192, 341, 446, 622
FaiI	YATR	8 cut(s)	21, 29, 190, 339, 444, 604, 606, 620
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	5 cut(s)	19, 188, 337, 442, 618
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	2 cut(s)	401, 473
FokI	GGATG	2 cut(s)	519, 635
FspBI	CTAG	2 cut(s)	327, 688
GsaI	CCCAGC	6 cut(s)	180, 345, 363, 375, 399, 471
HaeIII	GGCC	3 cut(s)	86, 218, 511
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	23, 192, 341, 446, 622
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	529
Hpy166II	GTNNAC	4 cut(s)	368, 402, 474, 629
Hpy188I	TCNGA	3 cut(s)	58, 235, 289
Hpy188III	TCNNGA	3 cut(s)	255, 529, 676
Hpy8I	GTNNAC	4 cut(s)	368, 402, 474, 629
HpyAV	CCTTC	3 cut(s)	51, 564, 572
HpyCH4III	ACNGT	4 cut(s)	406, 426, 633, 667
HpyCH4V	TGCA	4 cut(s)	337, 442, 488, 629
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 144, 147, 150, 153, 485, 491
HpyF3I	CTNAG	5 cut(s)	90, 95, 232, 288, 638
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	23, 192, 341, 446, 622
Kpn2I	TCCGGA	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	280, 284, 649, 653
LmnI	GCTCC	4 cut(s)	16, 119, 248, 590
Lsp1109I	GCAGC	4 cut(s)	55, 160, 343, 472
MaeI	CTAG	2 cut(s)	327, 688
MalI	GATC	4 cut(s)	282, 286, 651, 655
MboI	GATC	4 cut(s)	280, 284, 649, 653
MboII	GAAGA	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	2 cut(s)	516, 535
MluNI	TGGCCA	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	7 cut(s)	64, 89, 157, 216, 283, 323, 633
Mox20I	TGGCCA	1 cut(s)	511
MroI	TCCGGA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	198, 609
Msp20I	TGGCCA	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	7 cut(s)	111, 144, 147, 150, 153, 485, 491
NdeII	GATC	4 cut(s)	280, 284, 649, 653
NlaIII	CATG	5 cut(s)	23, 192, 341, 446, 622
NlaIV	GGNNCC	2 cut(s)	115, 217
NspI	RCATGY	2 cut(s)	192, 341
NspV	TTCGAA	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	6 cut(s)	176, 341, 359, 371, 395, 467
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	115, 217
PspPI	GGNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SaqAI	TTAA	2 cut(s)	198, 609
Sau3AI	GATC	4 cut(s)	280, 284, 649, 653
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	631
SfuI	TTCGAA	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	2 cut(s)	516, 535
SsiI	CCGC	7 cut(s)	138, 141, 144, 147, 150, 153, 156
SspMI	CTAG	2 cut(s)	327, 688
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	4 cut(s)	406, 426, 633, 667
TaqI	TCGA	3 cut(s)	283, 557, 652
TasI	AATT	2 cut(s)	516, 535
TauI	GCSGC	6 cut(s)	141, 144, 147, 150, 153, 156
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	198, 609
Tru9I	TTAA	2 cut(s)	198, 609
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	4 cut(s)	68, 173, 356, 485
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	627
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	2 cut(s)	192, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmiI	GTMKAC	2 cut(s)	401, 473
XspI	CTAG	2 cut(s)	327, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.