Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

14367756 .. 14370160

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAGCTGGAGATGAGGATTGCAAGACAATCCCAGCCATTAATCTGCAAAATTTTCCAGATGAAGAAGAGTACAGGAAACTGAGGGAAGCTTCAGAGACATGGGGATGCTTCAGGCTTATGAACCACAGGATTCCAGTGGCTTTGATGTCAGAGATGAAGTGTGTGGTCAGATCTATGCTGGAGCTGCCCTTGGAGATGAAGGAGCAGAACAAAGATTCACTAGCTTTCACTGGCTACATACCTCCCAGCAAACTCAATCCTCTCTTTGAGGCTTTCGGTATTTACGACTTGGCCTCACCTCAGGCTGTTCATGGCTTTTGCTCTCAGTTGGATGTCACTTCCCACCAGAGGTGCAGAGAGGTGATAGAGAAGTATGCTCAAGCAACATGCGAGCAGGTTGTGGACATCGGGAAGAAGTTGGCAGAAAGTTTAGGGGTGGCCAACACTGATTTCCACAAGGGATGGCCTTGCCAATTCAGGATGAACAAGTACAACTTCTCTCCTGCATCAATGGGGTCCCCTGGTCTACAAGAACACACAGATTCTGGATTTCTAACAATTCTTCAAGAGGATGAAGATGTTGGTGGTCTGGAAGTGATGAACAAATCTGGTGCCTTTGTGCCTGTTCATCCTTGCCCTGGCACTCTCTTTATCAATCTTGGGGACTTCGCTCAGGTTTGGAGCAATGGGAGGCTGCACAACGTGAGGCATAGAGTGAAATGCTCGGAGGCTAGTATTCGAGTTTCAATCGCTACATTTCTCAGCGGACCAAAAGAGGAAGCGATAGAAGCTCCACCGGAACTGGTAGATTCGGACCACCCACGTCTCTACGTCCCTTTCGTTTACGACGATTATAGAGTTAGCAAGTTCAAACTGCTCAAAAAATTACAGGCTGATAAAGCCCTTGCACTTCTACGTATCCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

34.78

Weight (kDa)

5.76

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	11 - 83	5.1e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	158 - 255	2.6e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	1 cut(s)	768
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	2 cut(s)	78, 97
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	74, 494
AfiI	CCNNNNNNNGG	2 cut(s)	351, 641
AgsI	TTSAA	3 cut(s)	569, 750, 874
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	523, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	8, 92, 187, 227, 794
AluI	AGCT	5 cut(s)	8, 92, 187, 227, 794
Alw26I	GTCTC	2 cut(s)	92, 833
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	294, 441, 467
ApeKI	GCWGC	2 cut(s)	187, 697
ApoI	RAATTY	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	519, 770, 817
AsuHPI	GGTGA	2 cut(s)	291, 376
AvaII	GGWCC	3 cut(s)	519, 770, 817
AxyI	CCTNAGG	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	174, 684
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	2 cut(s)	525, 642
BciVI	GTATCC	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	92, 833
BfaI	CTAG	2 cut(s)	224, 735
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	2 cut(s)	188, 698
BlsI	GCNGC	2 cut(s)	189, 699
Bme1390I	CCNGG	2 cut(s)	525, 642
Bme18I	GGWCC	3 cut(s)	519, 770, 817
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	519, 770, 817
BmiI	GGNNCC	3 cut(s)	520, 521, 616
BmrFI	CCNGG	2 cut(s)	525, 642
BmsI	GCATC	2 cut(s)	98, 518
BpmI	CTGGAG	2 cut(s)	30, 203
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	920
BsaJI	CCNNGG	3 cut(s)	192, 523, 640
BsaWI	WCCGGW	1 cut(s)	799
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 641
Bse1I	ACTGG	3 cut(s)	137, 238, 810
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	2 cut(s)	525, 642
BseDI	CCNNGG	3 cut(s)	192, 523, 640
BseGI	GGATG	6 cut(s)	113, 340, 470, 489, 580, 631
BseLI	CCNNNNNNNGG	2 cut(s)	351, 641
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	5 cut(s)	74, 317, 341, 689, 778
BseNI	ACTGG	3 cut(s)	137, 238, 810
BseXI	GCAGC	2 cut(s)	174, 684
BseYI	CCCAGC	2 cut(s)	34, 248
BsgI	GTGCAG	2 cut(s)	376, 683
BshFI	GGCC	3 cut(s)	296, 443, 469
BshNI	GGYRCC	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	3 cut(s)	505, 680, 821
BslI	CCNNNNNNNGG	2 cut(s)	351, 641
BsmAI	GTCTC	2 cut(s)	92, 833
BsmBI	CGTCTC	1 cut(s)	833
BsmFI	GGGAC	3 cut(s)	505, 680, 821
BsnI	GGCC	3 cut(s)	296, 443, 469
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	3 cut(s)	296, 443, 469
BspCNI	CTCAG	5 cut(s)	75, 316, 340, 688, 777
BspLI	GGNNCC	3 cut(s)	520, 521, 616
BspMI	ACCTGC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	137, 238, 810
BssECI	CCNNGG	3 cut(s)	192, 523, 640
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	525, 642
Bst6I	CTCTTC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	5 cut(s)	83, 303, 327, 675, 764
BstF5I	GGATG	6 cut(s)	113, 340, 470, 489, 580, 631
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	2 cut(s)	92, 833
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 791, 902
BstNI	CCWGG	2 cut(s)	525, 642
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	523, 640
BstSNI	TACGTA	1 cut(s)	920
BstV1I	GCAGC	2 cut(s)	174, 684
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	296, 443, 469
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	6 cut(s)	113, 340, 470, 489, 580, 631
BtsIMutI	CAGTG	3 cut(s)	144, 231, 447
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	395
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	3 cut(s)	519, 770, 817
Csp6I	GTAC	2 cut(s)	73, 493
CviAII	CATG	3 cut(s)	102, 314, 390
CviQI	GTAC	2 cut(s)	73, 493
DdeI	CTNAG	5 cut(s)	83, 303, 327, 675, 764
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DraIII	CACNNNGTG	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	920
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	519, 770, 817
Eco57I	CTGAAG	2 cut(s)	78, 97
Eco81I	CCTNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRII	CCWGG	2 cut(s)	523, 640
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	833
FaeI	CATG	3 cut(s)	105, 317, 393
FaiI	YATR	9 cut(s)	103, 122, 179, 242, 315, 378, 391, 714, 858
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FaqI	GGGAC	3 cut(s)	505, 680, 821
FatI	CATG	3 cut(s)	101, 313, 389
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	188, 698
FokI	GGATG	6 cut(s)	120, 347, 477, 496, 587, 618
Fsp4HI	GCNGC	2 cut(s)	188, 698
FspBI	CTAG	2 cut(s)	224, 735
GluI	GCNGC	2 cut(s)	188, 698
GsaI	CCCAGC	2 cut(s)	38, 252
GsuI	CTGGAG	2 cut(s)	30, 203
HaeIII	GGCC	3 cut(s)	296, 443, 469
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	3 cut(s)	105, 317, 393
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	4 cut(s)	133, 218, 545, 812
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	2 cut(s)	291, 376
Hpy166II	GTNNAC	3 cut(s)	406, 530, 847
Hpy188I	TCNGA	5 cut(s)	97, 154, 173, 730, 817
Hpy188III	TCNNGA	6 cut(s)	59, 412, 481, 549, 569, 593
Hpy8I	GTNNAC	3 cut(s)	406, 530, 847
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	4 cut(s)	705, 826, 834, 919
HpyCH4V	TGCA	6 cut(s)	24, 49, 357, 509, 700, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 791, 902
HpyF3I	CTNAG	5 cut(s)	83, 303, 327, 675, 764
HpySE526I	ACGT	4 cut(s)	705, 826, 834, 919
Hsp92II	CATG	3 cut(s)	105, 317, 393
KflI	GGGWCCC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	5 cut(s)	5, 184, 205, 684, 799
Lsp1109I	GCAGC	2 cut(s)	174, 684
LweI	GCATC	2 cut(s)	98, 518
MaeI	CTAG	2 cut(s)	224, 735
MaeII	ACGT	4 cut(s)	705, 826, 834, 919
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	5 cut(s)	77, 80, 427, 557, 590
MflI	RGATCY	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	52, 476, 561, 887
MluNI	TGGCCA	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	768
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	525, 642
MvaI	CCWGG	2 cut(s)	525, 642
MwoI	GCNNNNNNNGC	3 cut(s)	187, 791, 902
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	105, 317, 393
NlaIV	GGNNCC	3 cut(s)	520, 521, 616
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 840, 849
PfeI	GAWTC	4 cut(s)	133, 218, 545, 812
PkrI	GCNGC	2 cut(s)	189, 699
Ppu21I	YACGTR	1 cut(s)	920
PpuMI	RGGWCCY	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	523, 640
PspFI	CCCAGC	2 cut(s)	34, 248
PspGI	CCWGG	2 cut(s)	523, 640
PspN4I	GGNNCC	3 cut(s)	520, 521, 616
PspPI	GGNCC	3 cut(s)	519, 770, 817
PspPPI	RGGWCCY	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	2 cut(s)	74, 494
RsaNI	GTAC	2 cut(s)	73, 493
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	188, 698
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	3 cut(s)	519, 770, 817
ScrFI	CCNGG	2 cut(s)	525, 642
SfaNI	GCATC	2 cut(s)	98, 518
SinI	GGWCC	3 cut(s)	519, 770, 817
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SnaBI	TACGTA	1 cut(s)	920
Sse9I	AATT	4 cut(s)	52, 476, 561, 887
SsiI	CCGC	1 cut(s)	768
SspMI	CTAG	2 cut(s)	224, 735
StyD4I	CCNGG	2 cut(s)	523, 640
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	4 cut(s)	708, 829, 837, 922
TaqI	TCGA	1 cut(s)	742
TasI	AATT	4 cut(s)	52, 476, 561, 887
TatI	WGTACW	2 cut(s)	72, 492
TfiI	GAWTC	4 cut(s)	133, 218, 545, 812
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	144, 238, 454
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	187, 697
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	9 cut(s)	78, 137, 173, 215, 302, 500, 591, 617, 620
TspRI	CASTG	3 cut(s)	144, 238, 454
VpaK11BI	GGWCC	3 cut(s)	519, 770, 817
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	2 cut(s)	224, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.