Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

20016939 .. 20018124

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGCGGAACAACATCTTCACCATCGCACTCATCTGCCTTCTCGTCGCCGGCGTCGGAGGACAGGCTCCGTCATCCGCGCCCACTAACTCTCCGGCCACTCCAGCCGTCACCCCTCCAGCTACTACACCAGCTGCAGCTCCTAAGCCCAAGTCACCATCTCCAGTTGCCACCCCCAAATCTTCTCCCACTCCGGCGTCGGCTCCAACCAAGCCGGCCGCTGCTCCCACTCCGGTGGCCACTCCCCCTACCTCTACCGTCTCACCCCCATTGCCGACTCCTGAGAGCTCCCCACCGGCTAAGGCTCCGGTCAGCTCTCCACCGGCCAAATCTCCTCCGGCAGCCGCCCCTGCTCCCGCAGCTGAGCCACCCAGTACTCCTGAGGTCCCCGCTCCGGCTCCCAGCAAGAAGCCGAAGCACAAGTCTCCGGCGGCTGCTCCAACTCCCAGCAAGAGCAAGAGCAAGAAGCCGAAGCACAAGTCTCCGGCGGCTGCTCCGACTCCGGATGTAGCCAGCCCACCGGCGCCAGAGGGACCTGATGCTTCGTCTCCCGATGCTTCTTCTCCCGATGCTACGTCTCCGGGTCCTTCTACAGCAGCTGACGATCAGAGTGGTGCAATGACGATCAGGTCCCTGCACAAGGTGGTCGGATCCATCGCATTGGGATGGGCAGTATTGGCATTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

22.18

Weight (kDa)

9.72

Isoelectric Point (pI)

91.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	523
AccBSI	CCGCTC	2 cut(s)	7, 392
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	8 cut(s)	7, 78, 219, 345, 357, 390, 431, 488
AclWI	GGATC	2 cut(s)	645, 658
AcoI	YGGCCR	4 cut(s)	96, 216, 237, 324
AcyI	GRCGYC	3 cut(s)	54, 197, 524
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	394, 640
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	7 cut(s)	122, 134, 140, 288, 315, 362, 599
AluI	AGCT	7 cut(s)	122, 134, 140, 288, 315, 362, 599
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	5 cut(s)	265, 429, 486, 552, 582
AlwI	GGATC	2 cut(s)	645, 658
AlwNI	CAGNNNCTG	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	4 cut(s)	96, 216, 237, 324
ApeKI	GCWGC	8 cut(s)	134, 137, 221, 341, 359, 434, 491, 596
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 464, 496
AspLEI	GCGC	2 cut(s)	82, 526
AspS9I	GGNCC	4 cut(s)	385, 533, 584, 630
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	4 cut(s)	13, 103, 147, 255
AvaII	GGWCC	4 cut(s)	385, 533, 584, 630
AxyI	CCTNAGG	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	8 cut(s)	121, 149, 208, 353, 371, 421, 478, 608
BccI	CCATC	4 cut(s)	32, 166, 660, 662
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	5 cut(s)	265, 429, 486, 552, 582
BfmI	CTRYAG	2 cut(s)	135, 591
BfoI	RGCGCY	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	4 cut(s)	385, 533, 584, 630
BmgT120I	GGNCC	4 cut(s)	385, 533, 584, 630
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	529, 544, 559
BmuI	ACTGGG	1 cut(s)	366
BpmI	CTGGAG	3 cut(s)	87, 102, 147
Bpu10I	CCTNAGC	2 cut(s)	144, 300
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	582
BsaHI	GRCGYC	3 cut(s)	54, 197, 524
BsaWI	WCCGGW	3 cut(s)	232, 307, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 640
Bse118I	RCCGGY	5 cut(s)	50, 214, 295, 322, 520
Bse1I	ACTGG	2 cut(s)	164, 372
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	269, 624
BseAI	TCCGGA	1 cut(s)	502
BseGI	GGATG	3 cut(s)	74, 511, 671
BseLI	CCNNNNNNNGG	2 cut(s)	394, 640
BseMI	GCAATG	2 cut(s)	269, 624
BseMII	CTCAG	3 cut(s)	273, 354, 372
BseNI	ACTGG	2 cut(s)	164, 372
BseRI	GAGGAG	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	8 cut(s)	121, 149, 208, 353, 371, 421, 478, 608
BseYI	CCCAGC	2 cut(s)	401, 446
BsgI	GTGCAG	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	98, 218, 239, 326
BshNI	GGYRCC	1 cut(s)	523
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	290
BslFI	GGGAC	3 cut(s)	371, 546, 616
BslI	CCNNNNNNNGG	2 cut(s)	394, 640
BsmAI	GTCTC	5 cut(s)	265, 429, 486, 552, 582
BsmBI	CGTCTC	3 cut(s)	265, 552, 582
BsmFI	GGGAC	3 cut(s)	371, 546, 616
BsnI	GGCC	4 cut(s)	98, 218, 239, 326
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	604, 624, 650
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	8 cut(s)	7, 78, 219, 345, 357, 390, 431, 488
BspANI	GGCC	4 cut(s)	98, 218, 239, 326
BspCNI	CTCAG	3 cut(s)	274, 355, 373
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	645, 658
BspT107I	GGYRCC	1 cut(s)	523
BsrBI	CCGCTC	2 cut(s)	7, 392
BsrDI	GCAATG	2 cut(s)	269, 624
BsrFI	RCCGGY	5 cut(s)	50, 214, 295, 322, 520
BsrI	ACTGG	2 cut(s)	164, 372
BssAI	RCCGGY	5 cut(s)	50, 214, 295, 322, 520
BssMI	GATC	3 cut(s)	604, 624, 650
BssNI	GRCGYC	3 cut(s)	54, 197, 524
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	3 cut(s)	54, 197, 524
BstC8I	GCNNGC	3 cut(s)	52, 216, 514
BstDEI	CTNAG	5 cut(s)	144, 282, 300, 363, 381
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	3 cut(s)	74, 511, 671
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	82, 526
BstKTI	GATC	3 cut(s)	607, 627, 653
BstMAI	GTCTC	5 cut(s)	265, 429, 486, 552, 582
BstMBI	GATC	3 cut(s)	604, 624, 650
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 677
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	135, 591
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	8 cut(s)	121, 149, 208, 353, 371, 421, 478, 608
BstX2I	RGATCY	1 cut(s)	650
BstXI	CCANNNNNNTGG	2 cut(s)	235, 661
BstYI	RGATCY	1 cut(s)	650
BstZI	CGGCCG	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	98, 218, 239, 326
BtgZI	GCGATG	2 cut(s)	10, 640
BtsCI	GGATG	3 cut(s)	74, 511, 671
Cac8I	GCNNGC	3 cut(s)	52, 216, 514
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	2 cut(s)	82, 526
Cfr10I	RCCGGY	5 cut(s)	50, 214, 295, 322, 520
Cfr13I	GGNCC	4 cut(s)	385, 533, 584, 630
CseI	GACGC	2 cut(s)	43, 186
Csp6I	GTAC	1 cut(s)	375
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	5 cut(s)	144, 282, 300, 363, 381
DinI	GGCGCC	1 cut(s)	525
DpnI	GATC	3 cut(s)	606, 626, 652
DpnII	GATC	3 cut(s)	604, 624, 650
DraIII	CACNNNGTG	1 cut(s)	643
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	4 cut(s)	96, 216, 237, 324
EagI	CGGCCG	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	288
EclXI	CGGCCG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	4 cut(s)	385, 533, 584, 630
Eco52I	CGGCCG	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoO109I	RGGNCCY	4 cut(s)	385, 533, 584, 630
EcoT38I	GRGCYC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	525
EheI	GGCGCC	1 cut(s)	525
Esp3I	CGTCTC	3 cut(s)	265, 552, 582
FaiI	YATR	1 cut(s)	685
FaqI	GGGAC	3 cut(s)	371, 546, 616
FauI	CCCGC	2 cut(s)	364, 397
FokI	GGATG	3 cut(s)	61, 518, 678
FriOI	GRGCYC	1 cut(s)	290
GlaI	GCGC	2 cut(s)	81, 525
GsaI	CCCAGC	2 cut(s)	405, 450
GsuI	CTGGAG	3 cut(s)	87, 102, 147
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	4 cut(s)	98, 218, 239, 326
HgaI	GACGC	2 cut(s)	43, 186
HhaI	GCGC	2 cut(s)	82, 526
Hin1I	GRCGYC	3 cut(s)	54, 197, 524
Hin6I	GCGC	2 cut(s)	80, 524
HinP1I	GCGC	2 cut(s)	80, 524
HinfI	GANTC	2 cut(s)	277, 499
HphI	GGTGA	4 cut(s)	13, 103, 147, 255
Hpy188I	TCNGA	4 cut(s)	59, 498, 609, 650
Hpy188III	TCNNGA	5 cut(s)	281, 380, 503, 551, 566
Hpy99I	CGWCG	3 cut(s)	50, 59, 202
HpyAV	CCTTC	2 cut(s)	50, 597
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	3 cut(s)	137, 617, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 677
HpyF3I	CTNAG	5 cut(s)	144, 282, 300, 363, 381
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	3 cut(s)	54, 197, 524
HspAI	GCGC	2 cut(s)	80, 524
KasI	GGCGCC	1 cut(s)	523
Kpn2I	TCCGGA	1 cut(s)	502
KroI	GCCGGC	2 cut(s)	50, 214
KroNI	GCCGGC	2 cut(s)	52, 216
Kzo9I	GATC	3 cut(s)	604, 624, 650
Lsp1109I	GCAGC	8 cut(s)	121, 149, 208, 353, 371, 421, 478, 608
LweI	GCATC	3 cut(s)	529, 544, 559
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	109, 153
MalI	GATC	3 cut(s)	606, 626, 652
MbiI	CCGCTC	2 cut(s)	7, 392
MboI	GATC	3 cut(s)	604, 624, 650
MboII	GAAGA	3 cut(s)	10, 174, 552
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	524
MlyI	GAGTC	2 cut(s)	271, 493
MmeI	TCCRAC	5 cut(s)	37, 230, 464, 521, 628
MnlI	CCTC	6 cut(s)	53, 126, 262, 345, 376, 523
Mox20I	TGGCCA	1 cut(s)	239
MreI	CGCCGGCG	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	502
MroNI	GCCGGC	2 cut(s)	50, 214
MscI	TGGCCA	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	233, 664
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	4 cut(s)	134, 221, 362, 599
MspR9I	CCNGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 677
NaeI	GCCGGC	2 cut(s)	52, 216
NarI	GGCGCC	1 cut(s)	524
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	604, 624, 650
NgoMIV	GCCGGC	2 cut(s)	50, 214
NmuCI	GTSAC	2 cut(s)	109, 153
OliI	CACNNNNGTG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	2 cut(s)	52, 216
PleI	GAGTC	2 cut(s)	271, 493
PluTI	GGCGCC	1 cut(s)	527
PpsI	GAGTC	2 cut(s)	271, 493
PpuMI	RGGWCCY	4 cut(s)	385, 533, 584, 630
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	4 cut(s)	385, 533, 584, 630
PspFI	CCCAGC	2 cut(s)	401, 446
PspPI	GGNCC	4 cut(s)	385, 533, 584, 630
PspPPI	RGGWCCY	4 cut(s)	385, 533, 584, 630
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	650
PvuII	CAGCTG	3 cut(s)	134, 362, 599
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	2 cut(s)	233, 664
SacI	GAGCTC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	604, 624, 650
Sau96I	GGNCC	4 cut(s)	385, 533, 584, 630
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	2 cut(s)	271, 493
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	3 cut(s)	529, 544, 559
SfcI	CTRYAG	2 cut(s)	135, 591
SfoI	GGCGCC	1 cut(s)	525
SgrAI	CRCCGGYG	2 cut(s)	50, 520
SinI	GGWCC	4 cut(s)	385, 533, 584, 630
SmiMI	CAYNNNNRTG	2 cut(s)	233, 664
SsiI	CCGC	8 cut(s)	7, 78, 219, 345, 357, 390, 431, 488
SspDI	GGCGCC	1 cut(s)	523
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	578
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	4 cut(s)	221, 347, 434, 491
TseFI	GTSAC	2 cut(s)	109, 153
TseI	GCWGC	8 cut(s)	134, 137, 221, 341, 359, 434, 491, 596
Tsp45I	GTSAC	2 cut(s)	109, 153
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	4 cut(s)	385, 533, 584, 630
XagI	CCTNNNNNAGG	1 cut(s)	638
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.