pycom15g29980

Ribonuclease P protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002565
Physical Location & Seq
Forward (+)
27193869 .. 27194398
530 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGATAGGTTTCAGAGGGTGGAGAAGCCCAAGGCGGAGGCTGCGCCGATAAACGAGAATGAGATTCGTATAACAGCTCAAGGTAGAATGAGGAATTATATTACTTATGCCACCACTCTCTTCCAGGAGAAAGGATTTAATGAAATTGTTCTTAAGGCAATGGGCAGAGCTATCAATAAAACTGTTATGATTGCTGAGCTAATAAAGAGAAGGATTGTTGGTCTTCATCAGAATACTTCTATTGGATCAACTGATATTACAGACGTGTACGAGCCCCTGGAAGAAGGCCTGCTTCCGTATGAAACCATATTCTTCTATGCTACACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

110

Amino Acids

12.53

Weight (kDa)

6.59

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 20 - 84 4.2e-20 Alba
Rpp20 PF12328 41 - 94 4.6e-06 Rpp20 subunit of nuclear RNase MRP and P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 253
AfaI GTAC 1 cut(s) 269
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 264
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 123, 276
AluBI AGCT 3 cut(s) 77, 170, 199
AluI AGCT 3 cut(s) 77, 170, 199
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 125, 278
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 125, 278
BmgBI CACGTC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 125, 278
BpiI GAAGAC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 30, 276
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 2 cut(s) 125, 278
BseDI CCNNGG 2 cut(s) 30, 276
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 288
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 245
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 30, 276
BssMI GATC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 125, 278
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 125, 278
BstSCI CCNGG 2 cut(s) 123, 276
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 288
BtrI CACGTC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 268
CviJI RGCY 7 cut(s) 28, 41, 77, 170, 199, 274, 288
CviKI_1 RGCY 7 cut(s) 28, 41, 77, 170, 199, 274, 288
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 123, 276
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 30
FaiI YATR 8 cut(s) 71, 99, 108, 188, 300, 308, 318, 328
FalI AAGNNNNNCTT 2 cut(s) 276, 308
Fnu4HI GCNGC 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 288
HhaI GCGC 1 cut(s) 46
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 15, 231
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 204, 278
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 264
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 110, 137, 263, 290, 302
Lsp1109I GCAGC 1 cut(s) 28
MaeII ACGT 1 cut(s) 264
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 4 cut(s) 112, 215, 293, 304
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 94, 144
MnlI CCTC 3 cut(s) 9, 31, 84
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 138, 153
MspCI CTTAAG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 125, 278
MvaI CCWGG 2 cut(s) 125, 278
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 245
PceI AGGCCT 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 123, 276
PspGI CCWGG 2 cut(s) 123, 276
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 138, 153
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 125, 278
SduI GDGCHC 1 cut(s) 276
SetI ASST 6 cut(s) 11, 79, 85, 172, 201, 267
SmlI CTYRAG 2 cut(s) 78, 152
SmoI CTYRAG 2 cut(s) 78, 152
Sse9I AATT 2 cut(s) 94, 144
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 1 cut(s) 35
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 123, 276
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 267
TasI AATT 2 cut(s) 94, 144
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 138, 153
Tru9I TTAA 2 cut(s) 138, 153
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 156, 215, 315
TspGWI ACGGA 1 cut(s) 285
Vha464I CTTAAG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.