Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

39037593 .. 39040235

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGATTATCAGGAGATGGAGAAGTTTGGGATGGAGAAGGATTACGAGGACGCCCAGATGGATCGGCGGCGAGTTCTATTACCGCAAGCGCAAGGACAAGCCCGTCCAAACCAAAGACGACGTCCTCTACGGCATATTTACTGCCGATTCCGACGACGACGATGACAACGACGGCTCCAGAAAACGCAGGAAAGACCGAAGGGTCGACCTCACCAAGCCCGTCAGTTTTGTCTCCACAGGAATCGTCATGCCCAACCAGGAGGTCGACGACAATTCAAAGCAGCAAAACGATGATAAGCGGCCTGGCCTCGGCGCCACCACTGGCCTTGGATTTGGTGCCACTACGGGTTCCGGTTTAGGTTTTAAAAATCCGAATTCGGATTCGTTGGATGGCGAGGAGGAGGAGGAGGTGGACGATGAGCAGAGTTTTTTGCCGACGGCTTTTGGGAAGAAGATAAAGGAGGGAGCGGAGAGGAGACACAAGGAGAGGGAAAAAATGAAATTGCTCAAGCTTACTAGTAGTCAGTCTCAGAGTCGAGGAGGTTCTGAAGAACGTCAATTTTCAGGACTAGGAGCAAAGGGCGGTGGGGATGGGGGTCTGGGGGCCTTCGAGAAACACACCAAGGGCATTGGAATGAAGATGCTTAAGAACATGGGCTACAAAGGAGGCGGACTTGGGAAGAACGAGCAAGGCATTCTCGCTCCTATTGAAGCCAAGCTGAGGCCAAAGAATATGGGCATGGGTTTCAATGATTACAAGGAGACGGAAGTCAAGCGGCCTAGCTTGCAAGAATTGGAAGCTGAAAAGCCGAGCAAGCCTTTGCCCGCTGCCACCTCCACCAAAAAGAAGCCTTCCTGGAAGAAGAACAAGACTAACAAGGACCATTATGTCTCTGCCAAGGAGTTGTTAGCCCAGAAGCAGGAAGAAGGCACAGAGGTCCTTGTGCACAAGGTGGTTGATATGCGCGGACCTCAGGTTCGAGTCTTGACCAATCTGGAGAATTTGAATGCCGAAGAGAAAGCAAGGGAAGAGGATGTTCCCATGCCTGAGCTACAGCACAACGTCAGGTTGATTCTGGACTTAGCTGAGCTCGATATCCAGAAGATTGACAGGGACCTGAGGAATGAGCGGGACACGGCCATCAGCTTGAACCAGGAGAAAGAGAGGTTGGAGACGGAGGTGGCCAGGCAGAAGCAACACCTGGATAACTTGGAGGATATTAGGACCGTCTTAGATCGACTGGGAGAAGAGAATAGCATGGGAACATTGACGCTGGACTCCCTGACAAAGGGCTTTCGTGACCTGCAGAAGAGATACGCTGATGACTATAAGTTATGTAACTTGTCTTGCATTGCCTGCTCCTTTGCTCTGCCTCTGTTTATTAGGATGTTTCAAGGCTGGATCGATCCTCTTAGGAACCCCTCACATGGGTTGGATGTAGTATCTTCTTGGAAGGCTTTGCTTCATGGAGAGGGGGAGAGCGAGCAGTACCTGGATATTTGGGATAGCTCAATGTCCCCTTACACCAAATTGCTTTCCGAGGTGGTGGTACCCGCCGTGAGGATTGCTGGCGTCAATACATGGCAGCCCAAGGACCCTGAACCCATGCTTCGCTTTGTGGAGTCTTGGGAGAACTTGCTGCCTCTTTCTGTCCTTCATTCCATACTGGATATGGTAATCTTTCCTAAATTGAAGGACGCGGTTGACTTGTGGGAACCTCACCGGGACACTGTTCCCATCCATGTGTGGGTGCATCCGTGGCTACCACTCTTGGGACACAAGTTGGAAGACTTGTATCACACAATACGATTCAAGTTGAGTAATGTTCTGGGTGCTTGGCACCCAAGCGATGGATCGACCTATACCATACTCTCACCGTGGAAGAAGGTGTTTGATGCCGCGAGTTGGGAACAGCTTATGTATAGATTTATAGTACCCAAGTTGCAGCTTGTCTTACAAGAATTCCAAGTGAACCCTGCAGATCAGACACTTAGATGTAAATCGTGGATCGATCAGTTTAATTGGGTGATGAGTTGGGCTTCTGCTATTCCAATTCATCTAATGGTAGATATGATGGAGAAATTTTTCTTCACCAAGTGGCTACAGGTTTTGTATCACTGGTTATGTTCGAACCCGAACTTTGAAGAGATTTTAAATTGGTACAAAGGTTGGAAGGAACTCATTCCTGAGGAGCTTCATGCAAATGAAGGTATCCGGTATCAGCTTAATTGTGGTCTTGACATGATGAATCGGGCTGTTGAGGGTATGGAGGTGGTCCAACCTGGTTTGAAGGAGAATATTAGCTACCTTAGGGTGCTTGAGCAAAGGCAATTTGAGGCACAGCAGAAAGCAGCAGCAGCAGCACATGCAAACTTGGGTGGCACTGCTCAAATGGATGGCAATGGTCACGAGATGAGTTTGAAAGATGTTATTGAAGCCCATGCGCAGCAACATGGCCTGCTATTTAGGCCTAAGCCTGGGAGGATGCATAATGGTCACCAGATGTATGGCTTTGGTAATGTAAGCATAATAGTTGACTCCCTAAATCAAAAGGTATATGCCCAAACAGAGGAAACTTGGTCCCTTGTATCCCTTGAAAGGTTGCTGGACATGCACAATAATTTACTTACAAGGAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

881

Amino Acids

100.71

Weight (kDa)

6.53

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	22 - 99	3.4e-19	Tuftelin interacting protein N terminal
G-patch	PF01585	207 - 248	5e-14	G-patch domain
GCFC	PF07842	425 - 704	1.1e-85	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	101, 200, 887
AatII	GACGTC	1 cut(s)	123
Acc16I	TGCGCA	1 cut(s)	2445
Acc36I	ACCTGC	1 cut(s)	1311
Acc65I	GGTACC	1 cut(s)	1549
AccB1I	GGYRCC	4 cut(s)	311, 335, 1549, 1839
AccB7I	CCANNNNNTGG	1 cut(s)	1850
AccBSI	CCGCTC	2 cut(s)	467, 1129
AccI	GTMKAC	2 cut(s)	204, 264
AccII	CGCG	3 cut(s)	966, 1700, 1901
AclWI	GGATC	5 cut(s)	68, 1400, 1409, 1861, 2015
AcoI	YGGCCR	2 cut(s)	1137, 1182
AcsI	RAATTY	4 cut(s)	373, 1000, 1961, 2081
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	4 cut(s)	50, 120, 312, 1572
AdeI	CACNNNGTG	2 cut(s)	952, 2097
AfaI	GTAC	4 cut(s)	1490, 1551, 1935, 2162
AflII	CTTAAG	1 cut(s)	644
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	9 cut(s)	255, 301, 854, 1152, 1184, 1200, 1491, 2281, 2476
AjuI	GAANNNNNNNTTGG	2 cut(s)	1151, 1183
AloI	GAACNNNNNNTCC	2 cut(s)	960, 992
Alw21I	GWGCWC	2 cut(s)	948, 1092
Alw26I	GTCTC	7 cut(s)	235, 469, 531, 755, 895, 1166, 2629
Alw44I	GTGCAC	1 cut(s)	944
AlwI	GGATC	5 cut(s)	68, 1400, 1409, 1861, 2015
AlwNI	CAGNNNCTG	1 cut(s)	1492
ApaLI	GTGCAC	1 cut(s)	944
ApoI	RAATTY	4 cut(s)	373, 1000, 1961, 2081
ArsI	GACNNNNNNTTYG	4 cut(s)	105, 137, 960, 992
Asp700I	GAANNNNTTC	2 cut(s)	2084, 2181
Asp718I	GGTACC	1 cut(s)	1549
AspLEI	GCGC	4 cut(s)	90, 314, 966, 2446
AspS9I	GGNCC	9 cut(s)	603, 880, 937, 968, 1114, 1224, 1594, 2275, 2580
AsuC2I	CCSGG	1 cut(s)	1724
AsuHPI	GGTGA	6 cut(s)	202, 1712, 1866, 2038, 2083, 2489
AsuII	TTCGAA	1 cut(s)	2129
AvaII	GGWCC	8 cut(s)	880, 937, 968, 1114, 1224, 1594, 2275, 2580
AxyI	CCTNAGG	4 cut(s)	972, 1118, 2187, 2309
BaeGI	GKGCMC	1 cut(s)	948
BaeI	ACNNNNGTAYC	2 cut(s)	2152, 2185
BalI	TGGCCA	1 cut(s)	1184
BanI	GGYRCC	4 cut(s)	311, 335, 1549, 1839
BanII	GRGCYC	1 cut(s)	1092
BauI	CACGAG	1 cut(s)	2408
BbsI	GAAGAC	1 cut(s)	1794
Bbv12I	GWGCWC	2 cut(s)	948, 1092
BbvCI	CCTCAGC	1 cut(s)	719
BceAI	ACGGC	5 cut(s)	145, 187, 453, 1152, 1541
BciT130I	CCWGG	9 cut(s)	257, 303, 856, 1154, 1186, 1202, 1493, 2283, 2478
BciVI	GTATCC	2 cut(s)	2222, 2599
BcnI	CCSGG	1 cut(s)	1724
BcoDI	GTCTC	7 cut(s)	235, 469, 531, 755, 895, 1166, 2629
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	3 cut(s)	516, 569, 780
BfmI	CTRYAG	4 cut(s)	1052, 1304, 1977, 2102
BfoI	RGCGCY	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	1311
BfuI	GTATCC	2 cut(s)	2222, 2599
BlpI	GCTNAGC	1 cut(s)	1086
Bme18I	GGWCC	8 cut(s)	880, 937, 968, 1114, 1224, 1594, 2275, 2580
BmgT120I	GGNCC	9 cut(s)	603, 880, 937, 968, 1114, 1224, 1594, 2275, 2580
BmrI	ACTGGG	1 cut(s)	1250
BmsI	GCATC	4 cut(s)	630, 1762, 1885, 2475
BmuI	ACTGGG	1 cut(s)	1250
BoxI	GACNNNNGTC	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	1794
BpmI	CTGGAG	2 cut(s)	160, 1016
Bpu10I	CCTNAGC	3 cut(s)	719, 1047, 2472
Bpu1102I	GCTNAGC	1 cut(s)	1086
Bpu14I	TTCGAA	1 cut(s)	2129
BpuEI	CTTGAG	2 cut(s)	491, 2339
BpuMI	CCSGG	1 cut(s)	1724
Bsa29I	ATCGAT	2 cut(s)	1404, 2010
BsaBI	GATNNNNATC	1 cut(s)	1999
BsaHI	GRCGYC	4 cut(s)	50, 120, 312, 1572
BsaJI	CCNNGG	9 cut(s)	307, 325, 621, 897, 1539, 1590, 1757, 1877, 2477
BsaWI	WCCGGW	2 cut(s)	350, 2214
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse1I	ACTGG	4 cut(s)	325, 1245, 1671, 2123
Bse21I	CCTNAGG	4 cut(s)	972, 1118, 2187, 2309
Bse3DI	GCAATG	2 cut(s)	1350, 2407
Bse8I	GATNNNNATC	1 cut(s)	1999
BseBI	CCWGG	9 cut(s)	257, 303, 856, 1154, 1186, 1202, 1493, 2283, 2478
BseCI	ATCGAT	2 cut(s)	1404, 2010
BseDI	CCNNGG	9 cut(s)	307, 325, 621, 897, 1539, 1590, 1757, 1877, 2477
BseJI	GATNNNNATC	1 cut(s)	1999
BseMI	GCAATG	2 cut(s)	1350, 2407
BseMII	CTCAG	7 cut(s)	542, 710, 986, 1038, 1077, 1109, 2178
BseNI	ACTGG	4 cut(s)	325, 1245, 1671, 2123
BseRI	GAGGAG	7 cut(s)	410, 413, 416, 419, 487, 552, 2204
BseSI	GKGCMC	1 cut(s)	948
Bsh1236I	CGCG	3 cut(s)	966, 1700, 1901
BshNI	GGYRCC	4 cut(s)	311, 335, 1549, 1839
BshVI	ATCGAT	2 cut(s)	1404, 2010
BsiHKAI	GWGCWC	2 cut(s)	948, 1092
BsiSI	CCGG	3 cut(s)	351, 1723, 2215
BslFI	GGGAC	6 cut(s)	1127, 1145, 1501, 1739, 1788, 2566
BsmAI	GTCTC	7 cut(s)	235, 469, 531, 755, 895, 1166, 2629
BsmBI	CGTCTC	3 cut(s)	755, 1166, 2629
BsmFI	GGGAC	6 cut(s)	1127, 1145, 1501, 1739, 1788, 2566
BsmI	GAATGC	2 cut(s)	693, 1012
Bsp119I	TTCGAA	1 cut(s)	2129
Bsp1286I	GDGCHC	2 cut(s)	948, 1092
Bsp143I	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
Bsp1720I	GCTNAGC	1 cut(s)	1086
BspCNI	CTCAG	7 cut(s)	541, 711, 985, 1039, 1078, 1110, 2179
BspDI	ATCGAT	2 cut(s)	1404, 2010
BspFNI	CGCG	3 cut(s)	966, 1700, 1901
BspMAI	CTGCAG	2 cut(s)	1308, 1981
BspMI	ACCTGC	1 cut(s)	1311
BspPI	GGATC	5 cut(s)	68, 1400, 1409, 1861, 2015
BspT104I	TTCGAA	1 cut(s)	2129
BspT107I	GGYRCC	4 cut(s)	311, 335, 1549, 1839
BspTI	CTTAAG	1 cut(s)	644
BsrBI	CCGCTC	2 cut(s)	467, 1129
BsrDI	GCAATG	2 cut(s)	1350, 2407
BsrI	ACTGG	4 cut(s)	325, 1245, 1671, 2123
BssECI	CCNNGG	9 cut(s)	307, 325, 621, 897, 1539, 1590, 1757, 1877, 2477
BssMI	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
BssNI	GRCGYC	4 cut(s)	50, 120, 312, 1572
BssSI	CACGAG	1 cut(s)	2408
BssT1I	CCWWGG	4 cut(s)	325, 621, 897, 1590
Bst2BI	CACGAG	1 cut(s)	2408
Bst2UI	CCWGG	9 cut(s)	257, 303, 856, 1154, 1186, 1202, 1493, 2283, 2478
Bst4CI	ACNGT	3 cut(s)	1228, 1732, 1878
Bst6I	CTCTTC	5 cut(s)	1008, 1023, 1242, 1304, 2139
BstACI	GRCGYC	4 cut(s)	50, 120, 312, 1572
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	2 cut(s)	1356, 2366
BstBI	TTCGAA	1 cut(s)	2129
BstC8I	GCNNGC	8 cut(s)	86, 785, 815, 825, 1357, 1484, 1570, 2459
BstDSI	CCRYGG	2 cut(s)	1757, 1877
BstEII	GGTNACC	1 cut(s)	2495
BstENI	CCTNNNNNAGG	1 cut(s)	1286
BstFNI	CGCG	3 cut(s)	966, 1700, 1901
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	4 cut(s)	90, 314, 966, 2446
BstKTI	GATC	8 cut(s)	63, 1237, 1404, 1408, 1856, 1984, 2010, 2014
BstMAI	GTCTC	7 cut(s)	235, 469, 531, 755, 895, 1166, 2629
BstMBI	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
BstMWI	GCNNNNNNNGC	9 cut(s)	784, 814, 1356, 1759, 2357, 2360, 2366, 2467, 2611
BstNI	CCWGG	9 cut(s)	257, 303, 856, 1154, 1186, 1202, 1493, 2283, 2478
BstNSI	RCATGY	2 cut(s)	2369, 2614
BstPAI	GACNNNNGTC	1 cut(s)	767
BstPI	GGTNACC	1 cut(s)	2495
BstSFI	CTRYAG	4 cut(s)	1052, 1304, 1977, 2102
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	3 cut(s)	966, 1700, 1901
BstV2I	GAAGAC	1 cut(s)	1794
BstXI	CCANNNNNNTGG	1 cut(s)	2507
Bsu15I	ATCGAT	2 cut(s)	1404, 2010
Bsu36I	CCTNAGG	4 cut(s)	972, 1118, 2187, 2309
BsuI	GTATCC	2 cut(s)	2222, 2599
BsuTUI	ATCGAT	2 cut(s)	1404, 2010
BtgI	CCRYGG	2 cut(s)	1757, 1877
BtgZI	GCGATG	1 cut(s)	1863
BtsI	GCAGTG	1 cut(s)	2382
BtsIMutI	CAGTG	4 cut(s)	318, 1728, 2116, 2382
BveI	ACCTGC	1 cut(s)	1311
Cac8I	GCNNGC	8 cut(s)	86, 785, 815, 825, 1357, 1484, 1570, 2459
CaiI	CAGNNNCTG	1 cut(s)	1492
CfoI	GCGC	4 cut(s)	90, 314, 966, 2446
Cfr13I	GGNCC	9 cut(s)	603, 880, 937, 968, 1114, 1224, 1594, 2275, 2580
ClaI	ATCGAT	2 cut(s)	1404, 2010
CseI	GACGC	4 cut(s)	58, 1279, 1561, 1706
CsiI	ACCWGGT	1 cut(s)	2281
Csp6I	GTAC	4 cut(s)	1489, 1550, 1934, 2161
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviQI	GTAC	4 cut(s)	1489, 1550, 1934, 2161
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	8 cut(s)	62, 1236, 1403, 1407, 1855, 1983, 2009, 2013
DpnII	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
DraI	TTTAAA	2 cut(s)	364, 2154
DraIII	CACNNNGTG	2 cut(s)	952, 2097
DrdI	GACNNNNNNGTC	3 cut(s)	101, 200, 887
DseDI	GACNNNNNNGTC	3 cut(s)	101, 200, 887
EaeI	YGGCCR	2 cut(s)	1137, 1182
Eam1104I	CTCTTC	5 cut(s)	1008, 1023, 1242, 1304, 2139
EarI	CTCTTC	5 cut(s)	1008, 1023, 1242, 1304, 2139
EciI	GGCGGA	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	1090
Eco130I	CCWWGG	4 cut(s)	325, 621, 897, 1590
Eco147I	AGGCCT	1 cut(s)	2470
Eco24I	GRGCYC	1 cut(s)	1092
Eco32I	GATATC	1 cut(s)	1096
Eco47I	GGWCC	8 cut(s)	880, 937, 968, 1114, 1224, 1594, 2275, 2580
Eco53kI	GAGCTC	1 cut(s)	1090
Eco57I	CTGAAG	1 cut(s)	567
Eco81I	CCTNAGG	4 cut(s)	972, 1118, 2187, 2309
Eco91I	GGTNACC	1 cut(s)	2495
EcoICRI	GAGCTC	1 cut(s)	1090
EcoNI	CCTNNNNNAGG	1 cut(s)	1286
EcoO109I	RGGNCCY	4 cut(s)	603, 937, 1114, 1594
EcoO65I	GGTNACC	1 cut(s)	2495
EcoRI	GAATTC	2 cut(s)	373, 1961
EcoRII	CCWGG	9 cut(s)	255, 301, 854, 1152, 1184, 1200, 1491, 2281, 2476
EcoRV	GATATC	1 cut(s)	1096
EcoT14I	CCWWGG	4 cut(s)	325, 621, 897, 1590
EcoT22I	ATGCAT	1 cut(s)	2490
EcoT38I	GRGCYC	1 cut(s)	1092
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
ErhI	CCWWGG	4 cut(s)	325, 621, 897, 1590
Esp3I	CGTCTC	3 cut(s)	755, 1166, 2629
FaqI	GGGAC	6 cut(s)	1127, 1145, 1501, 1739, 1788, 2566
FauI	CCCGC	3 cut(s)	832, 1122, 1561
FblI	GTMKAC	2 cut(s)	204, 264
FriOI	GRGCYC	1 cut(s)	1092
FspBI	CTAG	3 cut(s)	516, 569, 780
FspI	TGCGCA	1 cut(s)	2445
GlaI	GCGC	4 cut(s)	89, 313, 965, 2445
GsuI	CTGGAG	2 cut(s)	160, 1016
HaeII	RGCGCY	1 cut(s)	315
HapII	CCGG	3 cut(s)	351, 1723, 2215
HgaI	GACGC	4 cut(s)	58, 1279, 1561, 1706
HhaI	GCGC	4 cut(s)	90, 314, 966, 2446
Hin1I	GRCGYC	4 cut(s)	50, 120, 312, 1572
Hin6I	GCGC	4 cut(s)	88, 312, 964, 2444
HinP1I	GCGC	4 cut(s)	88, 312, 964, 2444
HincII	GTYRAC	4 cut(s)	205, 265, 1705, 2536
HindII	GTYRAC	4 cut(s)	205, 265, 1705, 2536
HindIII	AAGCTT	1 cut(s)	509
HpaII	CCGG	3 cut(s)	351, 1723, 2215
HphI	GGTGA	6 cut(s)	202, 1712, 1866, 2038, 2083, 2489
Hpy166II	GTNNAC	7 cut(s)	205, 265, 412, 946, 1705, 1972, 2536
Hpy188I	TCNGA	7 cut(s)	151, 372, 379, 531, 547, 1540, 1986
Hpy8I	GTNNAC	7 cut(s)	205, 265, 412, 946, 1705, 1972, 2536
Hpy99I	CGWCG	7 cut(s)	122, 155, 158, 161, 173, 269, 439
HpyCH4III	ACNGT	3 cut(s)	1228, 1732, 1878
HpyCH4IV	ACGT	3 cut(s)	120, 553, 1062
HpyF10VI	GCNNNNNNNGC	9 cut(s)	784, 814, 1356, 1759, 2357, 2360, 2366, 2467, 2611
HpySE526I	ACGT	3 cut(s)	120, 553, 1062
Hsp92I	GRCGYC	4 cut(s)	50, 120, 312, 1572
HspAI	GCGC	4 cut(s)	88, 312, 964, 2444
KasI	GGCGCC	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	1553
Kzo9I	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
LmnI	GCTCC	6 cut(s)	179, 464, 572, 706, 1364, 2191
LweI	GCATC	4 cut(s)	630, 1762, 1885, 2475
MabI	ACCWGGT	1 cut(s)	2281
MaeI	CTAG	3 cut(s)	516, 569, 780
MaeII	ACGT	3 cut(s)	120, 553, 1062
MaeIII	GTNAC	4 cut(s)	1298, 1337, 2405, 2495
MalI	GATC	8 cut(s)	62, 1236, 1403, 1407, 1855, 1983, 2009, 2013
MbiI	CCGCTC	2 cut(s)	467, 1129
MboI	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
MhlI	GDGCHC	2 cut(s)	948, 1092
MlsI	TGGCCA	1 cut(s)	1184
MluNI	TGGCCA	1 cut(s)	1184
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	5 cut(s)	541, 990, 1271, 1631, 2531
MmeI	TCCRAC	7 cut(s)	174, 366, 1149, 1413, 1764, 2150, 2302
Mox20I	TGGCCA	1 cut(s)	1184
Mph1103I	ATGCAT	1 cut(s)	2490
MroXI	GAANNNNTTC	2 cut(s)	2084, 2181
MscI	TGGCCA	1 cut(s)	1184
MseI	TTAA	5 cut(s)	363, 645, 2019, 2153, 2226
MslI	CAYNNNNRTG	4 cut(s)	632, 1742, 1993, 2202
Msp20I	TGGCCA	1 cut(s)	1184
MspA1I	CMGCKG	1 cut(s)	827
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	3 cut(s)	351, 1723, 2215
Mva1269I	GAATGC	2 cut(s)	693, 1012
MvaI	CCWGG	9 cut(s)	257, 303, 856, 1154, 1186, 1202, 1493, 2283, 2478
MvnI	CGCG	3 cut(s)	966, 1700, 1901
MwoI	GCNNNNNNNGC	9 cut(s)	784, 814, 1356, 1759, 2357, 2360, 2366, 2467, 2611
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	1724
NdeII	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
NmeAIII	GCCGAG	2 cut(s)	288, 834
NmuCI	GTSAC	3 cut(s)	1298, 2405, 2495
NsbI	TGCGCA	1 cut(s)	2445
NsiI	ATGCAT	1 cut(s)	2490
NspI	RCATGY	2 cut(s)	2369, 2614
NspV	TTCGAA	1 cut(s)	2129
PceI	AGGCCT	1 cut(s)	2470
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	2 cut(s)	693, 1012
PdmI	GAANNNNTTC	2 cut(s)	2084, 2181
PfeI	GAWTC	6 cut(s)	146, 240, 380, 1072, 1809, 2248
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	1850
PfoI	TCCNGGA	1 cut(s)	854
PleI	GAGTC	5 cut(s)	540, 989, 1271, 1630, 2531
PluTI	GGCGCC	1 cut(s)	315
PpsI	GAGTC	5 cut(s)	540, 989, 1271, 1630, 2531
PpuMI	RGGWCCY	3 cut(s)	937, 1114, 1594
PshAI	GACNNNNGTC	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	1092
Psp5II	RGGWCCY	3 cut(s)	937, 1114, 1594
Psp6I	CCWGG	9 cut(s)	255, 301, 854, 1152, 1184, 1200, 1491, 2281, 2476
PspEI	GGTNACC	1 cut(s)	2495
PspGI	CCWGG	9 cut(s)	255, 301, 854, 1152, 1184, 1200, 1491, 2281, 2476
PspPI	GGNCC	9 cut(s)	603, 880, 937, 968, 1114, 1224, 1594, 2275, 2580
PspPPI	RGGWCCY	3 cut(s)	937, 1114, 1594
PsrI	GAACNNNNNNTAC	2 cut(s)	641, 673
PstI	CTGCAG	2 cut(s)	1308, 1981
PstNI	CAGNNNCTG	1 cut(s)	1492
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	4 cut(s)	1490, 1551, 1935, 2162
RsaNI	GTAC	4 cut(s)	1489, 1550, 1934, 2161
RseI	CAYNNNNRTG	4 cut(s)	632, 1742, 1993, 2202
SacI	GAGCTC	1 cut(s)	1092
SalI	GTCGAC	2 cut(s)	203, 263
SaqAI	TTAA	5 cut(s)	363, 645, 2019, 2153, 2226
Sau3AI	GATC	8 cut(s)	60, 1234, 1401, 1405, 1853, 1981, 2007, 2011
Sau96I	GGNCC	9 cut(s)	603, 880, 937, 968, 1114, 1224, 1594, 2275, 2580
SchI	GAGTC	5 cut(s)	541, 990, 1271, 1631, 2531
SduI	GDGCHC	2 cut(s)	948, 1092
SexAI	ACCWGGT	1 cut(s)	2281
SfaNI	GCATC	4 cut(s)	630, 1762, 1885, 2475
SfcI	CTRYAG	4 cut(s)	1052, 1304, 1977, 2102
SfoI	GGCGCC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	2129
SinI	GGWCC	8 cut(s)	880, 937, 968, 1114, 1224, 1594, 2275, 2580
SmiMI	CAYNNNNRTG	4 cut(s)	632, 1742, 1993, 2202
SmlI	CTYRAG	3 cut(s)	506, 644, 2318
SmoI	CTYRAG	3 cut(s)	506, 644, 2318
SpeI	ACTAGT	1 cut(s)	515
SseBI	AGGCCT	1 cut(s)	2470
SspDI	GGCGCC	1 cut(s)	311
SspI	AATATT	1 cut(s)	2299
SspMI	CTAG	3 cut(s)	516, 569, 780
SstI	GAGCTC	1 cut(s)	1092
StuI	AGGCCT	1 cut(s)	2470
StyI	CCWWGG	4 cut(s)	325, 621, 897, 1590
TaaI	ACNGT	3 cut(s)	1228, 1732, 1878
TaiI	ACGT	3 cut(s)	123, 556, 1065
TaqII	GACCGA	1 cut(s)	210
TauI	GCSGC	4 cut(s)	69, 301, 778, 1901
TfiI	GAWTC	6 cut(s)	146, 240, 380, 1072, 1809, 2248
Tru1I	TTAA	5 cut(s)	363, 645, 2019, 2153, 2226
Tru9I	TTAA	5 cut(s)	363, 645, 2019, 2153, 2226
TscAI	CASTG	4 cut(s)	325, 1735, 2123, 2389
TseFI	GTSAC	3 cut(s)	1298, 2405, 2495
Tsp45I	GTSAC	3 cut(s)	1298, 2405, 2495
TspDTI	ATGAA	8 cut(s)	512, 650, 1454, 1646, 2045, 2186, 2220, 2261
TspGWI	ACGGA	3 cut(s)	779, 1190, 1746
TspRI	CASTG	4 cut(s)	325, 1735, 2123, 2389
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	1850
Vha464I	CTTAAG	1 cut(s)	644
VneI	GTGCAC	1 cut(s)	944
VpaK11BI	GGWCC	8 cut(s)	880, 937, 968, 1114, 1224, 1594, 2275, 2580
XagI	CCTNNNNNAGG	1 cut(s)	1286
XapI	RAATTY	4 cut(s)	373, 1000, 1961, 2081
XceI	RCATGY	2 cut(s)	2369, 2614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1669
XmiI	GTMKAC	2 cut(s)	204, 264
XmnI	GAANNNNTTC	2 cut(s)	2084, 2181
XspI	CTAG	3 cut(s)	516, 569, 780
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	2490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.