Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

26805 .. 28320

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAGGAGGGTCAAGGAAGAGAGTGGAGGCCACTGAGACTGAGGAGAACTCCTTGTCAATGTCAACAGCACCACCACCTTCTCTCGTTCGCGGCAAGGATGGCAGTGCCTTTGCCCGATGCGATGAGTGCAACAAGGACGTGCCAGTGGCACTCATCACCATGCACAGCTGTAGCCTCGATGCCAAAATCAAGCTCAATCTCAAGGCTCAAGTTGTGGAAAGGCCCACTGAAGTGCAAAAGAAGCCTCCCACTGAGACTGAGAGAAAGAGGTCCACTACCGCCACATCACATCCAAAGATGTCAAAGAGAGCCAAGAAGGACAAAGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTCTTCCTGGATGATTTCAGGAAATCCTACAAGGAGGCTAATCCTGATTCCAAAGGTGTTAAGACGGAGAAGAAGCCCTATGTGGATAAAGCTGCTGAGCTTAAACAAGAGTACAAAAGAGCACTGGAGAGTGACATTGCAGGAGATGGCGATGGTGGAACAGCTGAAGGGGTTTTGGAGAAAGAAGTTTCAGAGAAGGAAGGGGAGGAAGAAATATCTGATGGTGATGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

201

Amino Acids

22.0

Weight (kDa)

5.93

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_WDHD1	PF24815	117 - 142	6.4e-06	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	93, 282
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	252, 552
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	5 cut(s)	171, 196, 458, 466, 530
AluI	AGCT	5 cut(s)	171, 196, 458, 466, 530
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	32, 251
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	30, 224
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	225, 273
AsuHPI	GGTGA	2 cut(s)	151, 602
AvaII	GGWCC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	4 cut(s)	95, 506, 512, 581
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	32, 251
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	2 cut(s)	94, 459
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	2 cut(s)	95, 460
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	225, 273
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	110, 172
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	512
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	2 cut(s)	188, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	146, 495
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	374
BseGI	GGATG	3 cut(s)	106, 292, 382
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	5 cut(s)	27, 33, 246, 252, 453
BseNI	ACTGG	2 cut(s)	146, 495
BseRI	GAGGAG	2 cut(s)	21, 59
BseXI	GCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	32, 226
BsiHKAI	GWGCWC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	32, 251
BsnI	GGCC	2 cut(s)	32, 226
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	328
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	2 cut(s)	93, 282
BspANI	GGCC	2 cut(s)	32, 226
BspCNI	CTCAG	5 cut(s)	28, 34, 247, 253, 454
BspFNI	CGCG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	146, 495
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	14, 374
BstDEI	CTNAG	5 cut(s)	36, 42, 255, 261, 462
BstF5I	GGATG	3 cut(s)	106, 292, 382
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	32, 251
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 129, 244
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	32, 226
BtgZI	GCGATG	2 cut(s)	138, 531
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	106, 292, 382
BtsI	GCAGTG	2 cut(s)	112, 354
BtsIMutI	CAGTG	7 cut(s)	33, 112, 153, 228, 252, 354, 488
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	225, 273
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	5 cut(s)	36, 42, 255, 261, 462
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	14, 374
EarI	CTCTTC	2 cut(s)	14, 374
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	252, 552
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 447
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	94, 459
FokI	GGATG	3 cut(s)	113, 279, 389
Fsp4HI	GCNGC	2 cut(s)	94, 459
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	94, 459
GsuI	CTGGAG	1 cut(s)	512
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	2 cut(s)	32, 226
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	2 cut(s)	151, 602
Hpy166II	GTNNAC	2 cut(s)	66, 276
Hpy188I	TCNGA	2 cut(s)	559, 586
Hpy188III	TCNNGA	2 cut(s)	385, 410
Hpy8I	GTNNAC	2 cut(s)	66, 276
HpyAV	CCTTC	6 cut(s)	90, 313, 370, 527, 556, 560
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	132, 166, 238, 338, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 129, 244
HpyF3I	CTNAG	5 cut(s)	36, 42, 255, 261, 462
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	328
LpnPI	CCDG	7 cut(s)	159, 359, 370, 386, 423, 476, 492
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	110, 172
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	5 cut(s)	31, 355, 361, 448, 587
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	490
MseI	TTAA	2 cut(s)	426, 468
MslI	CAYNNNNRTG	2 cut(s)	161, 233
MspA1I	CMGCKG	2 cut(s)	171, 530
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	102, 129, 244
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	95, 460
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	225, 273
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	2 cut(s)	171, 530
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	2 cut(s)	161, 233
SaqAI	TTAA	2 cut(s)	426, 468
SatI	GCNGC	2 cut(s)	94, 459
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	225, 273
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	490
SetI	ASST	9 cut(s)	82, 144, 173, 198, 275, 424, 460, 468, 532
SfaNI	GCATC	2 cut(s)	110, 172
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	161, 233
SmlI	CTYRAG	2 cut(s)	203, 210
SmoI	CTYRAG	2 cut(s)	203, 210
SsiI	CCGC	2 cut(s)	93, 282
StyD4I	CCNGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	180
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	426, 468
Tru9I	TTAA	2 cut(s)	426, 468
TscAI	CASTG	7 cut(s)	40, 112, 153, 235, 259, 361, 495
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	7 cut(s)	40, 112, 153, 235, 259, 361, 495
VpaK11BI	GGWCC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.