Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Reverse (-)

1682467 .. 1684104

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACCAAAGACGATGACTTTAAGCTCCTCAAAATCCAGTTTACCGTTATGTGCATTTCTTATTCAGTTTTCTTCCTTGTTTTGAAACCCAATTCTCCTACAGGTGTTTACCAAGTGAAAATAGATTCTGATCAGCAGAAAGTCACAGTTTCTGGAAGTGTGGATTCTGCAACTTTGATCAAGAAACTGCTCAGAGCTGGGAAACATGCTGAGATCTGGTCCCAGAAATCTAATAACCAAAGCCAGAAGGGAAACAACAACTGCATCAGAGATGACAAGACCAAGAACATCAACAACAACGAAGGGCAGAAACAGGGCATCCTCAAGAACTTCGAAGCCTTCAAAAACCAGCAAAAGTTTCCGTCTTTCAGCTCCGAGGAAGATGATGACTTCTTCGACGATGAGGAAGAAAGCGAGGAGGACGAGCTGCGATTTATCCGTGGGATGCTCAGGCAGCAGCAGCAGCAGCAAGCAAATGATGCAAAGAGAAATGCTGGAGTGATCAACGCGGCTGCTGCAGCTCCCAACAATGCGAAGATGATGAACAACAATGTTGGAAGTGTGAATCCCGGGAAGAAAGGTGGGCACCCAATTCAGAATATGAAGGCGAATCCAGGCGGGATTGATCCGAAAACAATGGCGGCCCTGAAGATGAACATCAATAACGGTGAAGCTACAAGAGGAAACATGAATGACCTGAGTGCGATGATGAGTTTAGCCGGTTTTCATGGAAATGGTGGAAATGTTGCTGCAAATGCTGCTGCTTTGGAAGCAAATCCCAACGTTCTTGGAGGGTTTCAGGCACAGGCAAACCCTAATGCAGCAGGTTTCCCAGGTGGTGGATATACCGCGGGGCAAATTGGTCAATACCCATCTTCTATCCTGATGAATCCAAATGGGTACACCCACCCATCACAGATGATGAACATGCAGGCTAGGCAAGCAGCAATGCAGCAACAGCCACAGATGATGTATCATAGGTCTCCCTTGGTTCCTCCTAGTACTGGCTACTACAATTACTATCCTAGCCCCGGCCCTAGCTTTTCCCCTACCGCCGCCGCATACCCCTACGGCAGTGAGCCTGGTTACGGCAGTAATAACACTGCTGCTCACATGTTCAGTGATGAGAACACCAGCAGCTGTTCAATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

385

Amino Acids

41.64

Weight (kDa)

7.01

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	585
AccB7I	CCANNNNNTGG	1 cut(s)	839
AccII	CGCG	2 cut(s)	509, 851
AciI	CCGC	8 cut(s)	509, 618, 641, 849, 851, 1053, 1056, 1059
AclI	AACGTT	1 cut(s)	783
AclWI	GGATC	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	902, 1003
AfiI	CCNNNNNNNGG	4 cut(s)	839, 1004, 1031, 1088
AflIII	ACRYGT	1 cut(s)	1113
AgsI	TTSAA	3 cut(s)	85, 343, 1146
AjnI	CCWGG	3 cut(s)	613, 832, 1081
AluBI	AGCT	8 cut(s)	25, 197, 372, 427, 521, 674, 1041, 1140
AluI	AGCT	8 cut(s)	25, 197, 372, 427, 521, 674, 1041, 1140
Alw26I	GTCTC	1 cut(s)	987
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	2 cut(s)	152, 1140
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	642, 1033
AspS9I	GGNCC	3 cut(s)	219, 643, 1034
AsuC2I	CCSGG	3 cut(s)	570, 571, 1032
AsuHPI	GGTGA	1 cut(s)	680
AsuII	TTCGAA	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	585
BccI	CCATC	2 cut(s)	880, 919
BceAI	ACGGC	2 cut(s)	1087, 1105
BciT130I	CCWGG	3 cut(s)	615, 834, 1083
BclI	TGATCA	3 cut(s)	130, 177, 501
BcnI	CCSGG	3 cut(s)	570, 571, 1032
BcoDI	GTCTC	1 cut(s)	987
BfaI	CTAG	4 cut(s)	936, 999, 1026, 1038
BfmI	CTRYAG	2 cut(s)	99, 516
BfuAI	ACCTGC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	1003
Bme1390I	CCNGG	6 cut(s)	570, 571, 615, 834, 1032, 1083
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	219, 643, 1034
BmiI	GGNNCC	3 cut(s)	221, 587, 993
BmrFI	CCNGG	6 cut(s)	570, 571, 615, 834, 1032, 1083
BmsI	GCATC	4 cut(s)	273, 327, 435, 469
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	3 cut(s)	570, 571, 1032
BsaBI	GATNNNNATC	2 cut(s)	129, 656
BsaI	GGTCTC	1 cut(s)	987
BsaJI	CCNNGG	7 cut(s)	375, 439, 569, 832, 849, 987, 1030
Bsc4I	CCNNNNNNNGG	4 cut(s)	839, 1004, 1031, 1088
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	37, 1009
Bse3DI	GCAATG	1 cut(s)	954
Bse8I	GATNNNNATC	2 cut(s)	129, 656
BseBI	CCWGG	3 cut(s)	615, 834, 1083
BseDI	CCNNGG	7 cut(s)	375, 439, 569, 832, 849, 987, 1030
BseGI	GGATG	2 cut(s)	318, 450
BseJI	GATNNNNATC	2 cut(s)	129, 656
BseLI	CCNNNNNNNGG	4 cut(s)	839, 1004, 1031, 1088
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	4 cut(s)	201, 205, 463, 689
BseNI	ACTGG	2 cut(s)	37, 1009
BseRI	GAGGAG	2 cut(s)	17, 431
BseSI	GKGCMC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	2 cut(s)	509, 851
BshFI	GGCC	2 cut(s)	644, 1035
BshNI	GGYRCC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	3 cut(s)	570, 720, 1032
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	4 cut(s)	839, 1004, 1031, 1088
BsmAI	GTCTC	1 cut(s)	987
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	644, 1035
Bso31I	GGTCTC	1 cut(s)	987
BsoBI	CYCGRG	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	130, 177, 213, 501, 625
BspACI	CCGC	8 cut(s)	509, 618, 641, 849, 851, 1053, 1056, 1059
BspANI	GGCC	2 cut(s)	644, 1035
BspCNI	CTCAG	4 cut(s)	202, 204, 462, 690
BspFNI	CGCG	2 cut(s)	509, 851
BspLI	GGNNCC	3 cut(s)	221, 587, 993
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	585
BspTNI	GGTCTC	1 cut(s)	987
BsrDI	GCAATG	1 cut(s)	954
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	2 cut(s)	37, 1009
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	7 cut(s)	375, 439, 569, 832, 849, 987, 1030
BssMI	GATC	5 cut(s)	130, 177, 213, 501, 625
BssT1I	CCWWGG	1 cut(s)	987
Bst2UI	CCWGG	3 cut(s)	615, 834, 1083
Bst4CI	ACNGT	3 cut(s)	46, 148, 668
BstAPI	GCANNNNNTGC	2 cut(s)	479, 758
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	471, 933, 942
BstDEI	CTNAG	4 cut(s)	191, 210, 449, 698
BstDSI	CCRYGG	2 cut(s)	439, 849
BstF5I	GGATG	2 cut(s)	318, 450
BstFNI	CGCG	2 cut(s)	509, 851
BstKTI	GATC	5 cut(s)	133, 180, 216, 504, 628
BstMAI	GTCTC	1 cut(s)	987
BstMBI	GATC	5 cut(s)	130, 177, 213, 501, 625
BstNI	CCWGG	3 cut(s)	615, 834, 1083
BstNSI	RCATGY	3 cut(s)	209, 931, 1117
BstSCI	CCNGG	6 cut(s)	568, 569, 613, 832, 1030, 1081
BstSFI	CTRYAG	2 cut(s)	99, 516
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	2 cut(s)	509, 851
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	644, 1035
BtgI	CCRYGG	2 cut(s)	439, 849
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	318, 450
BtsI	GCAGTG	2 cut(s)	1081, 1101
BtsIMutI	CAGTG	3 cut(s)	1081, 1101, 1126
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	471, 933, 942
CaiI	CAGNNNCTG	2 cut(s)	152, 1140
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	219, 643, 1034
Cfr42I	CCGCGG	1 cut(s)	852
Cfr9I	CCCGGG	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	901, 1002
CviAII	CATG	6 cut(s)	206, 688, 728, 928, 1114, 1150
CviQI	GTAC	2 cut(s)	901, 1002
DdeI	CTNAG	4 cut(s)	191, 210, 449, 698
DpnI	GATC	5 cut(s)	132, 179, 215, 503, 627
DpnII	GATC	5 cut(s)	130, 177, 213, 501, 625
Eco130I	CCWWGG	1 cut(s)	987
Eco31I	GGTCTC	1 cut(s)	987
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	613, 832, 1081
EcoT14I	CCWWGG	1 cut(s)	987
ErhI	CCWWGG	1 cut(s)	987
FaeI	CATG	6 cut(s)	209, 691, 731, 931, 1117, 1153
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	6 cut(s)	205, 687, 727, 927, 1113, 1149
FauI	CCCGC	2 cut(s)	611, 844
FbaI	TGATCA	3 cut(s)	130, 177, 501
FokI	GGATG	2 cut(s)	305, 457
FspBI	CTAG	4 cut(s)	936, 999, 1026, 1038
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	644, 1035
HapII	CCGG	3 cut(s)	570, 720, 1032
Hin1II	CATG	6 cut(s)	209, 691, 731, 931, 1117, 1153
HinfI	GANTC	5 cut(s)	125, 164, 565, 610, 889
HpaII	CCGG	3 cut(s)	570, 720, 1032
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	3 cut(s)	42, 109, 903
Hpy188I	TCNGA	6 cut(s)	130, 194, 269, 376, 597, 630
Hpy188III	TCNNGA	4 cut(s)	153, 181, 325, 883
Hpy8I	GTNNAC	3 cut(s)	42, 109, 903
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	4 cut(s)	241, 296, 349, 598
HpyCH4III	ACNGT	3 cut(s)	46, 148, 668
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	9 cut(s)	54, 170, 264, 482, 518, 752, 821, 931, 952
HpyF3I	CTNAG	4 cut(s)	191, 210, 449, 698
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	6 cut(s)	209, 691, 731, 931, 1117, 1153
Ksp22I	TGATCA	3 cut(s)	130, 177, 501
KspI	CCGCGG	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	130, 177, 213, 501, 625
LmnI	GCTCC	3 cut(s)	30, 377, 526
LweI	GCATC	4 cut(s)	273, 327, 435, 469
MaeI	CTAG	4 cut(s)	936, 999, 1026, 1038
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	2 cut(s)	142, 1085
MalI	GATC	5 cut(s)	132, 179, 215, 503, 627
MboI	GATC	5 cut(s)	130, 177, 213, 501, 625
MboII	GAAGA	8 cut(s)	64, 385, 392, 419, 547, 586, 661, 867
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	4 cut(s)	91, 591, 858, 1015
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	9 cut(s)	38, 332, 370, 397, 409, 412, 674, 785, 1005
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	851, 1140
MspI	CCGG	3 cut(s)	570, 720, 1032
MspR9I	CCNGG	6 cut(s)	570, 571, 615, 834, 1032, 1083
MvaI	CCWGG	3 cut(s)	615, 834, 1083
MvnI	CGCG	2 cut(s)	509, 851
NciI	CCSGG	3 cut(s)	570, 571, 1032
NdeII	GATC	5 cut(s)	130, 177, 213, 501, 625
NlaIII	CATG	6 cut(s)	209, 691, 731, 931, 1117, 1153
NlaIV	GGNNCC	3 cut(s)	221, 587, 993
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	3 cut(s)	209, 931, 1117
NspV	TTCGAA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	1113
PfeI	GAWTC	5 cut(s)	125, 164, 565, 610, 889
PflMI	CCANNNNNTGG	1 cut(s)	839
PscI	ACATGT	1 cut(s)	1113
Psp1406I	AACGTT	1 cut(s)	783
Psp6I	CCWGG	3 cut(s)	613, 832, 1081
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	613, 832, 1081
PspN4I	GGNNCC	3 cut(s)	221, 587, 993
PspPI	GGNCC	3 cut(s)	219, 643, 1034
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	152, 1140
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	1140
RsaI	GTAC	2 cut(s)	902, 1003
RsaNI	GTAC	2 cut(s)	901, 1002
RseI	CAYNNNNRTG	1 cut(s)	732
SacII	CCGCGG	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	21
Sau3AI	GATC	5 cut(s)	130, 177, 213, 501, 625
Sau96I	GGNCC	3 cut(s)	219, 643, 1034
ScaI	AGTACT	1 cut(s)	1003
ScrFI	CCNGG	6 cut(s)	570, 571, 615, 834, 1032, 1083
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	4 cut(s)	273, 327, 435, 469
SfcI	CTRYAG	2 cut(s)	99, 516
Sfr303I	CCGCGG	1 cut(s)	852
SfuI	TTCGAA	1 cut(s)	333
SgrBI	CCGCGG	1 cut(s)	852
SinI	GGWCC	1 cut(s)	219
SmaI	CCCGGG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	91, 591, 858, 1015
SsiI	CCGC	8 cut(s)	509, 618, 641, 849, 851, 1053, 1056, 1059
SspMI	CTAG	4 cut(s)	936, 999, 1026, 1038
StyD4I	CCNGG	6 cut(s)	568, 569, 613, 832, 1030, 1081
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	3 cut(s)	46, 148, 668
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	333, 396
TasI	AATT	4 cut(s)	91, 591, 858, 1015
TatI	WGTACW	1 cut(s)	1001
TauI	GCSGC	4 cut(s)	512, 644, 1058, 1061
TfiI	GAWTC	5 cut(s)	125, 164, 565, 610, 889
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	3 cut(s)	1081, 1108, 1126
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	7 cut(s)	557, 617, 668, 704, 716, 902, 938
TspGWI	ACGGA	2 cut(s)	351, 428
TspMI	CCCGGG	1 cut(s)	569
TspRI	CASTG	3 cut(s)	1081, 1108, 1126
Van91I	CCANNNNNTGG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	219
XceI	RCATGY	3 cut(s)	209, 931, 1117
XmaI	CCCGGG	1 cut(s)	569
XspI	CTAG	4 cut(s)	936, 999, 1026, 1038
ZrmI	AGTACT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.