pycom17g01260

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002093
Physical Location & Seq
Reverse (-)
859889 .. 861289
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 768 bp
ATGGCGGACTATCACTTTGTGTACAAGGACTTGGAGGGAGCATCGACTCAGTGGGACGACATACAGAGAAAGCTCGGGAACCTTCCCGCGAAGCCACCGCCGTTCAAGCCGCCGAAGTTCACACCGGCTCAGGACGAAGCCTCCCTTCCCAAAGACAAGTCCTGGATCGATGAGAAATCCGAGCAGGACCTCGAAGACCTCGAGGACAATCCCGATCTCGACGACGATCGCTTCCTCGAAGAATACAGGTCCTCACAGAAGAAGAGGCTGGCGGAGCTGAGAGAAGCAGCCAAAGTTGCGAGGTTCGGATCGGTGGTGCCGATTTCGGGATCGGATTTCGTGCGGGAGGTGTCTCAGGCGCCGCCGGATGTTTGGGTGGTTGTGATTTTGTACAAAGAAGGAATCGCCGAGTGCGGGGTTTTGATGCAGTGTATGGAAGATTTGGCGACGAAATATCCCGCTACAAAATTCGTCAAGATAATATCGACGGACTGCATTCCGAACTACCCTGATCGGAATGTTCCGACTGTTTTAGTATACAACAGTGGGAATGTCAAAGCTAACTACGTCGGCTTGCAGAGCTTTGGCCGCAGATGCACACCTGAAGGTGTGGCATTACTTCTGTGCCAATCAGATCCTGTACTTAATGATGGCCTGAGTGGAAATGATCAGTCGAGGCAAGCTGTGATCGATGGAGTTCGCAGGAGGTTTATAGAGAAGGTTGTGACTGAGCATGAAGACGTTGATGATGGGTCCTCGAGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

256

Amino Acids

28.54

Weight (kDa)

4.69

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 71 - 191 4.9e-13 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 316, 358
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 89
AclWI GGATC 4 cut(s) 173, 316, 337, 629
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 359
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 3 cut(s) 23, 392, 642
AfiI CCNNNNNNNGG 2 cut(s) 326, 414
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 5 cut(s) 73, 277, 560, 582, 683
AluI AGCT 5 cut(s) 73, 277, 560, 582, 683
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 4 cut(s) 173, 316, 337, 629
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 3 cut(s) 74, 200, 757
AoxI GGCC 2 cut(s) 586, 652
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 467
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 187, 249, 753
AvaI CYCGRG 3 cut(s) 74, 200, 757
AvaII GGWCC 3 cut(s) 187, 249, 753
BanI GGYRCC 2 cut(s) 316, 358
BbsI GAAGAC 2 cut(s) 201, 744
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 644, 686, 743
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 4 cut(s) 110, 288, 362, 589
BlsI GCNGC 4 cut(s) 111, 289, 363, 590
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 3 cut(s) 187, 249, 753
BmeT110I CYCGRG 3 cut(s) 74, 200, 757
BmgT120I GGNCC 3 cut(s) 187, 249, 753
BmiI GGNNCC 4 cut(s) 80, 318, 360, 754
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 3 cut(s) 50, 414, 584
BpiI GAAGAC 2 cut(s) 201, 744
Bpu10I CCTNAGC 1 cut(s) 129
Bsa29I ATCGAT 2 cut(s) 168, 690
BsaHI GRCGYC 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 414
Bse118I RCCGGY 1 cut(s) 124
BseBI CCWGG 1 cut(s) 163
BseCI ATCGAT 2 cut(s) 168, 690
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 326, 414
BseMII CTCAG 6 cut(s) 62, 143, 269, 368, 647, 720
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 588, 654
BshNI GGYRCC 2 cut(s) 316, 358
BshVI ATCGAT 2 cut(s) 168, 690
BsiEI CGRYCG 1 cut(s) 229
BsiHKCI CYCGRG 3 cut(s) 74, 200, 757
BsiSI CCGG 2 cut(s) 125, 365
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 326, 414
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 2 cut(s) 588, 654
BsoBI CYCGRG 3 cut(s) 74, 200, 757
Bsp1407I TGTACA 2 cut(s) 21, 390
Bsp143I GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
BspANI GGCC 2 cut(s) 588, 654
BspCNI CTCAG 6 cut(s) 61, 142, 270, 367, 648, 721
BspDI ATCGAT 2 cut(s) 168, 690
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 4 cut(s) 80, 318, 360, 754
BspPI GGATC 4 cut(s) 173, 316, 337, 629
BspT107I GGYRCC 2 cut(s) 316, 358
BsrFI RCCGGY 1 cut(s) 124
BsrGI TGTACA 2 cut(s) 21, 390
BssAI RCCGGY 1 cut(s) 124
BssMI GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
BssNAI GTATAC 1 cut(s) 538
BssNI GRCGYC 1 cut(s) 359
Bst1107I GTATAC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 529, 545
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 359
BstAUI TGTACA 2 cut(s) 21, 390
BstC8I GCNNGC 3 cut(s) 270, 575, 681
BstDEI CTNAG 6 cut(s) 48, 129, 278, 354, 656, 729
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 9 cut(s) 168, 217, 229, 311, 332, 514, 637, 670, 690
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 6 cut(s) 106, 274, 296, 579, 588, 594
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 2 cut(s) 201, 744
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BstZ17I GTATAC 1 cut(s) 538
Bsu15I ATCGAT 2 cut(s) 168, 690
BsuRI GGCC 2 cut(s) 588, 654
BsuTUI ATCGAT 2 cut(s) 168, 690
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 3 cut(s) 56, 434, 550
Cac8I GCNNGC 3 cut(s) 270, 575, 681
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 187, 249, 753
ClaI ATCGAT 2 cut(s) 168, 690
Csp6I GTAC 3 cut(s) 22, 391, 641
CviAII CATG 1 cut(s) 734
CviQI GTAC 3 cut(s) 22, 391, 641
DdeI CTNAG 6 cut(s) 48, 129, 278, 354, 656, 729
DinI GGCGCC 1 cut(s) 360
DpnI GATC 9 cut(s) 167, 216, 228, 310, 331, 513, 636, 669, 689
DpnII GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 2 cut(s) 20, 287
Eco47I GGWCC 3 cut(s) 187, 249, 753
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 3 cut(s) 74, 200, 757
EcoO109I RGGNCCY 3 cut(s) 187, 249, 753
EcoRII CCWGG 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
FaeI CATG 1 cut(s) 737
FaiI YATR 5 cut(s) 62, 434, 538, 713, 735
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 733
FauI CCCGC 4 cut(s) 94, 336, 407, 466
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 110, 288, 362, 589
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 110, 288, 362, 589
GlaI GCGC 1 cut(s) 360
GluI GCNGC 4 cut(s) 110, 288, 362, 589
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 588, 654
HapII CCGG 2 cut(s) 125, 365
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 1 cut(s) 737
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 2 cut(s) 46, 402
HpaII CCGG 2 cut(s) 125, 365
Hpy166II GTNNAC 3 cut(s) 22, 120, 538
Hpy188I TCNGA 7 cut(s) 181, 308, 334, 501, 516, 525, 634
Hpy188III TCNNGA 6 cut(s) 76, 131, 212, 218, 327, 475
Hpy8I GTNNAC 3 cut(s) 22, 120, 538
Hpy99I CGWCG 5 cut(s) 224, 227, 451, 490, 572
HpyAV CCTTC 5 cut(s) 92, 155, 392, 599, 712
HpyCH4III ACNGT 2 cut(s) 529, 545
HpyCH4IV ACGT 2 cut(s) 567, 741
HpyCH4V TGCA 4 cut(s) 427, 495, 577, 597
HpyF10VI GCNNNNNNNGC 6 cut(s) 106, 274, 296, 579, 588, 594
HpyF3I CTNAG 6 cut(s) 48, 129, 278, 354, 656, 729
HpySE526I ACGT 2 cut(s) 567, 741
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 1 cut(s) 737
HspAI GCGC 1 cut(s) 359
KasI GGCGCC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
LmnI GCTCC 2 cut(s) 38, 274
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 50, 414, 584
MaeII ACGT 2 cut(s) 567, 741
MaeIII GTNAC 1 cut(s) 724
MalI GATC 9 cut(s) 167, 216, 228, 310, 331, 513, 636, 669, 689
MboI GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
MboII GAAGA 6 cut(s) 206, 251, 271, 274, 449, 749
MflI RGATCY 1 cut(s) 634
MluCI AATT 1 cut(s) 467
Mly113I GGCGCC 1 cut(s) 359
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 548
MseI TTAA 1 cut(s) 645
MspI CCGG 2 cut(s) 125, 365
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 6 cut(s) 106, 274, 296, 579, 588, 594
NarI GGCGCC 1 cut(s) 359
NdeII GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
NlaIII CATG 1 cut(s) 737
NlaIV GGNNCC 4 cut(s) 80, 318, 360, 754
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 724
PaeR7I CTCGAG 2 cut(s) 200, 757
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 317
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 4 cut(s) 111, 289, 363, 590
Ple19I CGATCG 1 cut(s) 229
PleI GAGTC 1 cut(s) 40
PluTI GGCGCC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 3 cut(s) 187, 249, 753
Psp5II RGGWCCY 3 cut(s) 187, 249, 753
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 80, 318, 360, 754
PspPI GGNCC 3 cut(s) 187, 249, 753
PspPPI RGGWCCY 3 cut(s) 187, 249, 753
PspXI VCTCGAGB 2 cut(s) 200, 757
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 634
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 3 cut(s) 23, 392, 642
RsaNI GTAC 3 cut(s) 22, 391, 641
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 4 cut(s) 110, 288, 362, 589
Sau3AI GATC 9 cut(s) 165, 214, 226, 308, 329, 511, 634, 667, 687
Sau96I GGNCC 3 cut(s) 187, 249, 753
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 163
SfaNI GCATC 3 cut(s) 50, 414, 584
SfoI GGCGCC 1 cut(s) 360
Sfr274I CTCGAG 2 cut(s) 200, 757
SinI GGWCC 3 cut(s) 187, 249, 753
SlaI CTCGAG 2 cut(s) 200, 757
SmlI CTYRAG 2 cut(s) 200, 757
SmoI CTYRAG 2 cut(s) 200, 757
Sse9I AATT 1 cut(s) 467
SspDI GGCGCC 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 529, 545
TaiI ACGT 2 cut(s) 570, 744
TasI AATT 1 cut(s) 467
TatI WGTACW 3 cut(s) 21, 390, 640
TauI GCSGC 3 cut(s) 112, 364, 591
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 3 cut(s) 56, 434, 550
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 1 cut(s) 750
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 56, 434, 550
VpaK11BI GGWCC 3 cut(s) 187, 249, 753
XapI RAATTY 1 cut(s) 467
XhoI CTCGAG 2 cut(s) 200, 757
XmiI GTMKAC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.