pycom17g01300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001258
Physical Location & Seq
Forward (+)
883594 .. 884415
822 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
ATGATCAGATTCCGGCCGATCGCTCCGAAACCGGCGGATGGCGGCTCTTCCTCCGGTACGACTTCGGCGGATGGTAAAACCTTTCTTAGTGCAAGCAAGAGAGTCAAGAGGAAGTACATTAGGGTTGCAAAAAACCCTAAAAATAATAACAGCGCCAGAAAAATAATCAACAGTAAATCTTCCGCAGAAGATAATCCGAAGGCTGTAGTCACTCTTCAGCTGATGCCGGAAAAAACAGACTCGAGAGATTTTACAGGTAGTGGATCTTGGTGTACTACGGTTGATCCTACGGTTGTTAAAAGATCAGATAACAGGGAGTTGCCTACGTGGATGAACCTAAACCCTAAGATGAACTGGTCCGTCTATAACGCGGACACACGATCCGGCACAGATAGTACGGCGGTGGTGCCTCGGCTGGCGGCGGTGGACTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGATGTACGACGTTTAGGTTGTACGGACGTGGAGAAACTGAAGAGTTTGGATAAAGACACGTGTCCGGGGTTTATATCGGACGGTTTTAACAGAGTGCAGTGGGTGAACGAAGCCTACAAGAGGATGGTGAACTACGTGGAGGGGCAGTCGCCGCCGGCGGAGGCTGTGGTGTGCCTGGCTACGAAAGAGAGCCTGCCGTATACTCACCCAGCGTTCAGTTGCCGGGTGAGGCTGCAGTACTACACGAGGCAGAAGGAGAAGTGCTCGAAGATGGTGCCGTGCGATGTGTGGAGGATGGAGTGCGGGTTGGCTTGGAGGCTGGACATCAAGGCGGCGCTTAGTTTGGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.43

Weight (kDa)

9.38

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 142 - 270 3.1e-58 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 406, 742
AccI GTMKAC 1 cut(s) 668
AccII CGCG 1 cut(s) 371
AclWI GGATC 3 cut(s) 271, 278, 375
AcoI YGGCCR 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 200, 527
AcvI CACGTG 2 cut(s) 462, 528
AfaI GTAC 7 cut(s) 58, 116, 274, 397, 474, 490, 707
AfiI CCNNNNNNNGG 2 cut(s) 38, 588
AflIII ACRYGT 3 cut(s) 459, 525, 527
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 1 cut(s) 642
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 734
AlwI GGATC 3 cut(s) 271, 278, 375
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 700
AspLEI GCGC 2 cut(s) 155, 805
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 2 cut(s) 534, 692
AsuHPI GGTGA 5 cut(s) 448, 583, 607, 665, 706
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 1 cut(s) 357
BanI GGYRCC 2 cut(s) 406, 742
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BauI CACGAG 2 cut(s) 430, 712
BbrPI CACGTG 2 cut(s) 462, 528
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 687
BccI CCATC 5 cut(s) 32, 65, 586, 733, 757
BceAI ACGGC 3 cut(s) 414, 649, 730
BcgI CGANNNNNNTGC 2 cut(s) 724, 758
BciT130I CCWGG 1 cut(s) 644
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 534, 692
BfmI CTRYAG 2 cut(s) 204, 701
BfoI RGCGCY 2 cut(s) 156, 806
BisI GCNGC 5 cut(s) 43, 420, 620, 701, 801
BlsI GCNGC 5 cut(s) 44, 421, 621, 702, 802
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 3 cut(s) 534, 644, 692
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 408, 744
BmrFI CCNGG 3 cut(s) 534, 644, 692
BmsI GCATC 1 cut(s) 213
BoxI GACNNNNGTC 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpuMI CCSGG 2 cut(s) 534, 692
BsaAI YACGTR 4 cut(s) 327, 462, 528, 604
BsaJI CCNNGG 2 cut(s) 410, 533
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 4 cut(s) 599, 629, 758, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 588
Bse118I RCCGGY 2 cut(s) 31, 622
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 410, 533
BseGI GGATG 6 cut(s) 43, 76, 336, 475, 597, 768
BseLI CCNNNNNNNGG 2 cut(s) 38, 588
BseNI ACTGG 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 687
BseYI CCCAGC 1 cut(s) 676
BsgI GTGCAG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 2 cut(s) 17, 21
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 2 cut(s) 406, 742
BsiEI CGRYCG 2 cut(s) 17, 21
BsiHKAI GWGCWC 1 cut(s) 734
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 8 cut(s) 13, 32, 54, 227, 384, 533, 623, 691
BslI CCNNNNNNNGG 2 cut(s) 38, 588
BsnI GGCC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 6 cut(s) 3, 18, 263, 283, 302, 380
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 408, 744
BspMAI CTGCAG 1 cut(s) 705
BspPI GGATC 3 cut(s) 271, 278, 375
BspQI GCTCTTC 1 cut(s) 52
BspT107I GGYRCC 2 cut(s) 406, 742
BsrFI RCCGGY 2 cut(s) 31, 622
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 2 cut(s) 31, 622
BssECI CCNNGG 2 cut(s) 410, 533
BssMI GATC 6 cut(s) 3, 18, 263, 283, 302, 380
BssNAI GTATAC 1 cut(s) 669
BssSI CACGAG 2 cut(s) 430, 712
Bst1107I GTATAC 1 cut(s) 669
Bst2BI CACGAG 2 cut(s) 430, 712
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 5 cut(s) 173, 280, 292, 442, 551
Bst6I CTCTTC 3 cut(s) 52, 219, 503
BstBAI YACGTR 4 cut(s) 327, 462, 528, 604
BstC8I GCNNGC 4 cut(s) 94, 417, 624, 662
BstDEI CTNAG 3 cut(s) 86, 345, 806
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 6 cut(s) 43, 76, 336, 475, 597, 768
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 2 cut(s) 156, 806
BstHHI GCGC 2 cut(s) 155, 805
BstKTI GATC 6 cut(s) 6, 21, 266, 286, 305, 383
BstMBI GATC 6 cut(s) 3, 18, 263, 283, 302, 380
BstMCI CGRYCG 2 cut(s) 17, 21
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNI CCWGG 1 cut(s) 644
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 532, 642, 690
BstSFI CTRYAG 2 cut(s) 204, 701
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BstZ17I GTATAC 1 cut(s) 669
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 765
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 6 cut(s) 43, 76, 336, 475, 597, 768
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 1 cut(s) 572
Cac8I GCNNGC 4 cut(s) 94, 417, 624, 662
CfoI GCGC 2 cut(s) 155, 805
Cfr10I RCCGGY 2 cut(s) 31, 622
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 7 cut(s) 57, 115, 273, 396, 473, 489, 706
CviAII CATG 1 cut(s) 466
CviQI GTAC 7 cut(s) 57, 115, 273, 396, 473, 489, 706
DdeI CTNAG 3 cut(s) 86, 345, 806
DpnI GATC 6 cut(s) 5, 20, 265, 285, 304, 382
DpnII GATC 6 cut(s) 3, 18, 263, 283, 302, 380
EaeI YGGCCR 1 cut(s) 14
EagI CGGCCG 1 cut(s) 14
Eam1104I CTCTTC 3 cut(s) 52, 219, 503
EarI CTCTTC 3 cut(s) 52, 219, 503
EciI GGCGGA 3 cut(s) 50, 83, 641
EclXI CGGCCG 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 200, 527
Eco72I CACGTG 2 cut(s) 462, 528
Eco88I CYCGRG 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 642
FaeI CATG 1 cut(s) 469
FaiI YATR 4 cut(s) 366, 467, 542, 669
FatI CATG 1 cut(s) 465
FauI CCCGC 1 cut(s) 764
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 5 cut(s) 43, 420, 620, 701, 801
FokI GGATG 6 cut(s) 50, 83, 343, 482, 604, 775
Fsp4HI GCNGC 5 cut(s) 43, 420, 620, 701, 801
GlaI GCGC 2 cut(s) 154, 804
GluI GCNGC 5 cut(s) 43, 420, 620, 701, 801
GsaI CCCAGC 1 cut(s) 680
HaeII RGCGCY 2 cut(s) 156, 806
HaeIII GGCC 1 cut(s) 16
HapII CCGG 8 cut(s) 13, 32, 54, 227, 384, 533, 623, 691
HhaI GCGC 2 cut(s) 155, 805
Hin1II CATG 1 cut(s) 469
Hin6I GCGC 2 cut(s) 153, 803
HinP1I GCGC 2 cut(s) 153, 803
HinfI GANTC 4 cut(s) 9, 102, 239, 428
HpaII CCGG 8 cut(s) 13, 32, 54, 227, 384, 533, 623, 691
HphI GGTGA 5 cut(s) 448, 583, 607, 665, 706
Hpy166II GTNNAC 5 cut(s) 273, 427, 574, 598, 669
Hpy188I TCNGA 5 cut(s) 8, 27, 198, 307, 547
Hpy188III TCNNGA 2 cut(s) 106, 243
Hpy8I GTNNAC 5 cut(s) 273, 427, 574, 598, 669
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 193, 715
HpyCH4III ACNGT 5 cut(s) 173, 280, 292, 442, 551
HpyCH4IV ACGT 6 cut(s) 326, 461, 478, 495, 527, 603
HpyCH4V TGCA 5 cut(s) 92, 128, 465, 565, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 3 cut(s) 86, 345, 806
HpySE526I ACGT 6 cut(s) 326, 461, 478, 495, 527, 603
Hsp92II CATG 1 cut(s) 469
HspAI GCGC 2 cut(s) 153, 803
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 18, 263, 283, 302, 380
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 687
LweI GCATC 1 cut(s) 213
MaeII ACGT 6 cut(s) 326, 461, 478, 495, 527, 603
MaeIII GTNAC 3 cut(s) 208, 436, 451
MalI GATC 6 cut(s) 5, 20, 265, 285, 304, 382
MboI GATC 6 cut(s) 3, 18, 263, 283, 302, 380
MboII GAAGA 6 cut(s) 39, 171, 200, 206, 520, 748
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 734
MlyI GAGTC 3 cut(s) 111, 233, 422
MreI CGCCGGCG 1 cut(s) 622
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 2 cut(s) 297, 555
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 8 cut(s) 13, 32, 54, 227, 384, 533, 623, 691
MspR9I CCNGG 3 cut(s) 534, 644, 692
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 619
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 2 cut(s) 534, 692
NdeII GATC 6 cut(s) 3, 18, 263, 283, 302, 380
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 408, 744
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 3 cut(s) 208, 436, 451
PaeR7I CTCGAG 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 5 cut(s) 44, 421, 621, 702, 802
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 3 cut(s) 110, 233, 422
PmaCI CACGTG 2 cut(s) 462, 528
PmlI CACGTG 2 cut(s) 462, 528
PpsI GAGTC 3 cut(s) 110, 233, 422
Ppu21I YACGTR 4 cut(s) 327, 462, 528, 604
PshAI GACNNNNGTC 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 642
PspCI CACGTG 2 cut(s) 462, 528
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 2 cut(s) 408, 744
PspPI GGNCC 1 cut(s) 357
PsrI GAACNNNNNNTAC 2 cut(s) 566, 598
PstI CTGCAG 1 cut(s) 705
PsuI RGATCY 1 cut(s) 263
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 7 cut(s) 58, 116, 274, 397, 474, 490, 707
RsaNI GTAC 7 cut(s) 57, 115, 273, 396, 473, 489, 706
RseI CAYNNNNRTG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 297, 555
SatI GCNGC 5 cut(s) 43, 420, 620, 701, 801
Sau3AI GATC 6 cut(s) 3, 18, 263, 283, 302, 380
Sau96I GGNCC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 3 cut(s) 111, 233, 422
ScrFI CCNGG 3 cut(s) 534, 644, 692
SduI GDGCHC 1 cut(s) 734
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 2 cut(s) 204, 701
Sfr274I CTCGAG 1 cut(s) 241
SgrAI CRCCGGYG 1 cut(s) 622
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
StyD4I CCNGG 3 cut(s) 532, 642, 690
TaaI ACNGT 5 cut(s) 173, 280, 292, 442, 551
TaiI ACGT 6 cut(s) 329, 464, 481, 498, 530, 606
TaqI TCGA 2 cut(s) 242, 734
TatI WGTACW 3 cut(s) 114, 272, 705
TauI GCSGC 4 cut(s) 45, 422, 622, 803
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 297, 555
Tru9I TTAA 2 cut(s) 297, 555
TscAI CASTG 1 cut(s) 572
TseFI GTSAC 3 cut(s) 208, 436, 451
TseI GCWGC 1 cut(s) 700
Tsp45I GTSAC 3 cut(s) 208, 436, 451
TspDTI ATGAA 2 cut(s) 347, 365
TspGWI ACGGA 2 cut(s) 349, 506
TspRI CASTG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 357
XagI CCTNNNNNAGG 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 668
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.