pycom17g01310

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001258
Physical Location & Seq
Forward (+)
889577 .. 890644
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGTCTGAAGCATTAAAAAATCTCTCCTGGTGCAGGTGGGGGAAGTGCACTGTTTGTTCACGCGCGCTTCCTCTCACGCTTACTAATAGAATCATCACCTGCTTGAGCTCCCACTCCGACGAGAGGGAGAAAGAAAGCAAGAGAGAGAAAGATGGTGTAGCGCCGGTTGATATGGAAGGCGGAGAAGGGCGGCTCATGCTAAGATGCGCTGGGGGTGAGCAGGATAAGCATACAATCATGAACCGGAACATGCTCAGATTCCGGCCGATTGCACCGAAACCGGTGGCCAACGGAGCCGGAGAGGTTGGTAACAAAAACTCGGGTTTGAGTGTTTTGACAAGTGCAAGAAGAAAGAGAAAGTACGTTAGGATTTCCAAGAATAATGTATGTAGGGCGAAGGATAAGGATCCTAAGCGCGTGGTGACGACGCTGCAGCTCTTGCCGGAGAAGAACGATATAGAGAGCTCATCGGACAGTGGATCCCGGCGTCCTTTAGATCCTACGGTGACGGACAGTAATAGCGATAGAAATAATCAAAATAGTTATCCTGCTGGAAAAGAAGATGAGGGCTTACGCCTAGGAATTCCCATGTGGTTGAGGAATTACATGGGTGGTGGAGGAGGATCAGATCCGACGGTGGGGATGCGGCAGATGGAGGCGGTGGAGTCTTGGGTGACGGTGGAGTGCGTGACAGGCACATGCATGAATGCGCACGGTACGTTTGGAAGTGTTAGGAGTAGGGACGTGGAGGGGATGAGGAGTGATCTGGAGAGGGACACGTGTCCGGGGTTTATATCGGACGGTCAGAACAGGGTGCAGTGGCTGAACGAGGCTTTTAAGAAGATGGTGAGCCAGCAGAAATGTGCGGCGGAGATAGCGGTGTTGTTGGTGGTGAAAGAGAAGCTGCCGTATGCGGATGCTTTAGCGTTAACGTGCCAAGTAAAGCTGCAGTACACGGTGGGTAAGGAGAGGTGCTCTCGAATTGTGCCTTGTGATTTGTGGAGAATGGACGGTGGAGGATTTGCATGGAGGCTCGACGTCAAGGCTGCTCTAACTCTAGGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.32

Weight (kDa)

9.2

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 221 - 352 4e-50 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 24, 107
AatII GACGTC 1 cut(s) 1041
Acc16I TGCGCA 1 cut(s) 711
Acc36I ACCTGC 2 cut(s) 24, 107
AccII CGCG 3 cut(s) 63, 65, 417
AciI CCGC 8 cut(s) 180, 190, 646, 659, 866, 869, 878, 914
AclWI GGATC 7 cut(s) 401, 414, 474, 487, 491, 623, 631
AcoI YGGCCR 2 cut(s) 263, 285
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 27
AcvI CACGTG 1 cut(s) 780
AcyI GRCGYC 2 cut(s) 487, 1038
AfaI GTAC 3 cut(s) 362, 718, 953
AfiI CCNNNNNNNGG 3 cut(s) 33, 123, 638
AflIII ACRYGT 2 cut(s) 777, 779
AgeI ACCGGT 1 cut(s) 280
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 5 cut(s) 108, 436, 465, 904, 946
AluI AGCT 5 cut(s) 108, 436, 465, 904, 946
Alw21I GWGCWC 4 cut(s) 50, 110, 467, 977
Alw44I GTGCAC 1 cut(s) 46
AlwI GGATC 7 cut(s) 401, 414, 474, 487, 491, 623, 631
AlwNI CAGNNNCTG 1 cut(s) 823
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 3 cut(s) 263, 285, 1060
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 5 cut(s) 430, 433, 904, 946, 1046
ApoI RAATTY 1 cut(s) 582
AsiGI ACCGGT 1 cut(s) 280
AspA2I CCTAGG 1 cut(s) 577
AspLEI GCGC 6 cut(s) 65, 67, 163, 209, 417, 712
AsuC2I CCSGG 2 cut(s) 484, 786
AsuHPI GGTGA 7 cut(s) 88, 227, 433, 517, 685, 859, 904
AvaI CYCGRG 1 cut(s) 319
AvrII CCTAGG 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 287
BamHI GGATCC 2 cut(s) 406, 479
BanII GRGCYC 2 cut(s) 110, 467
BbrPI CACGTG 1 cut(s) 780
Bbv12I GWGCWC 4 cut(s) 50, 110, 467, 977
BbvI GCAGC 5 cut(s) 417, 445, 891, 933, 1033
BccI CCATC 3 cut(s) 146, 646, 838
BceAI ACGGC 2 cut(s) 892, 1047
BciT130I CCWGG 1 cut(s) 28
BcnI CCSGG 2 cut(s) 484, 786
BfaI CTAG 2 cut(s) 578, 1058
BfmI CTRYAG 2 cut(s) 431, 947
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 2 cut(s) 24, 107
BisI GCNGC 8 cut(s) 191, 431, 434, 647, 867, 905, 947, 1047
BlnI CCTAGG 1 cut(s) 577
BlsI GCNGC 8 cut(s) 192, 432, 435, 648, 868, 906, 948, 1048
Bme1390I CCNGG 3 cut(s) 28, 484, 786
BmeT110I CYCGRG 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 745
BmiI GGNNCC 3 cut(s) 295, 408, 481
BmrFI CCNGG 3 cut(s) 28, 484, 786
BmsI GCATC 3 cut(s) 194, 633, 907
BoxI GACNNNNGTC 1 cut(s) 780
BplI GAGNNNNNCTC 4 cut(s) 959, 991, 961, 993
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 484, 786
BsaAI YACGTR 1 cut(s) 780
BsaBI GATNNNNATC 1 cut(s) 405
BsaHI GRCGYC 2 cut(s) 487, 1038
BsaJI CCNNGG 2 cut(s) 577, 785
BsaWI WCCGGW 2 cut(s) 243, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 123, 638
Bse118I RCCGGY 2 cut(s) 163, 280
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 577, 785
BseGI GGATG 3 cut(s) 648, 759, 922
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 3 cut(s) 33, 123, 638
BseMII CTCAG 1 cut(s) 268
BsePI GCGCGC 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 633, 772
BseSI GKGCMC 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 417, 445, 891, 933, 1033
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 2 cut(s) 52, 836
Bsh1236I CGCG 3 cut(s) 63, 65, 417
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 265, 287, 1062
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 4 cut(s) 50, 110, 467, 977
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 8 cut(s) 164, 244, 262, 281, 297, 443, 484, 785
BslFI GGGAC 2 cut(s) 755, 788
BslI CCNNNNNNNGG 3 cut(s) 33, 123, 638
BsmFI GGGAC 2 cut(s) 755, 788
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 3 cut(s) 265, 287, 1062
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 4 cut(s) 50, 110, 467, 977
Bsp143I GATC 6 cut(s) 406, 479, 496, 623, 628, 763
BspACI CCGC 8 cut(s) 180, 190, 646, 659, 866, 869, 878, 914
BspANI GGCC 3 cut(s) 265, 287, 1062
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 3 cut(s) 63, 65, 417
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 295, 408, 481
BspMAI CTGCAG 2 cut(s) 435, 951
BspMI ACCTGC 2 cut(s) 24, 107
BspPI GGATC 7 cut(s) 401, 414, 474, 487, 491, 623, 631
BsrFI RCCGGY 2 cut(s) 163, 280
BssAI RCCGGY 2 cut(s) 163, 280
BssECI CCNNGG 2 cut(s) 577, 785
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 6 cut(s) 406, 479, 496, 623, 628, 763
BssNI GRCGYC 2 cut(s) 487, 1038
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 28
BstACI GRCGYC 2 cut(s) 487, 1038
BstAPI GCANNNNNTGC 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 65, 854
BstDEI CTNAG 3 cut(s) 200, 254, 411
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 648, 759, 922
BstFNI CGCG 3 cut(s) 63, 65, 417
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 6 cut(s) 65, 67, 163, 209, 417, 712
BstKTI GATC 6 cut(s) 409, 482, 499, 626, 631, 766
BstMBI GATC 6 cut(s) 406, 479, 496, 623, 628, 763
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 6 cut(s) 196, 226, 293, 439, 693, 875
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 2 cut(s) 253, 702
BstPAI GACNNNNGTC 1 cut(s) 780
BstSCI CCNGG 3 cut(s) 26, 482, 784
BstSFI CTRYAG 2 cut(s) 431, 947
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 3 cut(s) 63, 65, 417
BstV1I GCAGC 5 cut(s) 417, 445, 891, 933, 1033
BstX2I RGATCY 4 cut(s) 406, 479, 496, 628
BstYI RGATCY 4 cut(s) 406, 479, 496, 628
BstZI CGGCCG 1 cut(s) 263
BsuRI GGCC 3 cut(s) 265, 287, 1062
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 3 cut(s) 648, 759, 922
BtsI GCAGTG 1 cut(s) 824
BtsIMutI CAGTG 3 cut(s) 48, 481, 824
BveI ACCTGC 2 cut(s) 24, 107
Cac8I GCNNGC 2 cut(s) 65, 854
CaiI CAGNNNCTG 1 cut(s) 823
CciI TCATGA 1 cut(s) 237
CfoI GCGC 6 cut(s) 65, 67, 163, 209, 417, 712
Cfr10I RCCGGY 2 cut(s) 163, 280
CseI GACGC 2 cut(s) 436, 476
Csp6I GTAC 3 cut(s) 361, 717, 952
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 8 cut(s) 196, 238, 250, 589, 607, 699, 703, 1026
CviQI GTAC 3 cut(s) 361, 717, 952
DdeI CTNAG 3 cut(s) 200, 254, 411
DpnI GATC 6 cut(s) 408, 481, 498, 625, 630, 765
DpnII GATC 6 cut(s) 406, 479, 496, 623, 628, 763
EaeI YGGCCR 2 cut(s) 263, 285
EagI CGGCCG 1 cut(s) 263
EciI GGCGGA 2 cut(s) 195, 884
Ecl136II GAGCTC 2 cut(s) 108, 465
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 110, 467
Eco52I CGGCCG 1 cut(s) 263
Eco53kI GAGCTC 2 cut(s) 108, 465
Eco57I CTGAAG 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 319
EcoICRI GAGCTC 2 cut(s) 108, 465
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 704
EcoT38I GRGCYC 2 cut(s) 110, 467
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 8 cut(s) 199, 241, 253, 592, 610, 702, 706, 1029
FaqI GGGAC 2 cut(s) 755, 788
FatI CATG 8 cut(s) 195, 237, 249, 588, 606, 698, 702, 1025
Fnu4HI GCNGC 8 cut(s) 191, 431, 434, 647, 867, 905, 947, 1047
FokI GGATG 3 cut(s) 655, 766, 929
FriOI GRGCYC 2 cut(s) 110, 467
Fsp4HI GCNGC 8 cut(s) 191, 431, 434, 647, 867, 905, 947, 1047
FspAI RTGCGCAY 1 cut(s) 711
FspBI CTAG 2 cut(s) 578, 1058
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 6 cut(s) 64, 66, 162, 208, 416, 711
GluI GCNGC 8 cut(s) 191, 431, 434, 647, 867, 905, 947, 1047
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 265, 287, 1062
HapII CCGG 8 cut(s) 164, 244, 262, 281, 297, 443, 484, 785
HgaI GACGC 2 cut(s) 436, 476
HhaI GCGC 6 cut(s) 65, 67, 163, 209, 417, 712
Hin1I GRCGYC 2 cut(s) 487, 1038
Hin1II CATG 8 cut(s) 199, 241, 253, 592, 610, 702, 706, 1029
Hin6I GCGC 6 cut(s) 63, 65, 161, 207, 415, 710
HinP1I GCGC 6 cut(s) 63, 65, 161, 207, 415, 710
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HinfI GANTC 3 cut(s) 90, 258, 665
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 8 cut(s) 164, 244, 262, 281, 297, 443, 484, 785
HphI GGTGA 7 cut(s) 88, 227, 433, 517, 685, 859, 904
Hpy166II GTNNAC 4 cut(s) 48, 59, 930, 954
Hpy188I TCNGA 8 cut(s) 7, 118, 257, 472, 628, 633, 799, 807
Hpy188III TCNNGA 3 cut(s) 238, 767, 978
Hpy8I GTNNAC 4 cut(s) 48, 59, 930, 954
Hpy99I CGWCG 4 cut(s) 122, 430, 637, 1040
HpyAV CCTTC 3 cut(s) 170, 179, 391
HpyCH4IV ACGT 6 cut(s) 363, 719, 744, 779, 932, 1038
HpyCH4V TGCA 9 cut(s) 33, 48, 272, 344, 433, 702, 817, 949, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 226, 293, 439, 693, 875
HpyF3I CTNAG 3 cut(s) 200, 254, 411
HpySE526I ACGT 6 cut(s) 363, 719, 744, 779, 932, 1038
Hsp92I GRCGYC 2 cut(s) 487, 1038
Hsp92II CATG 8 cut(s) 199, 241, 253, 592, 610, 702, 706, 1029
HspAI GCGC 6 cut(s) 63, 65, 161, 207, 415, 710
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 6 cut(s) 406, 479, 496, 623, 628, 763
LmnI GCTCC 2 cut(s) 113, 293
Lsp1109I GCAGC 5 cut(s) 417, 445, 891, 933, 1033
LweI GCATC 3 cut(s) 194, 633, 907
MaeI CTAG 2 cut(s) 578, 1058
MaeII ACGT 6 cut(s) 363, 719, 744, 779, 932, 1038
MaeIII GTNAC 5 cut(s) 308, 421, 505, 673, 688
MalI GATC 6 cut(s) 408, 481, 498, 625, 630, 765
MboI GATC 6 cut(s) 406, 479, 496, 623, 628, 763
MboII GAAGA 4 cut(s) 360, 460, 572, 853
MflI RGATCY 4 cut(s) 406, 479, 496, 628
MhlI GDGCHC 4 cut(s) 50, 110, 467, 977
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 582, 601, 981
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 2 cut(s) 141, 656
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 704
MscI TGGCCA 1 cut(s) 287
MseI TTAA 3 cut(s) 14, 837, 929
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 8 cut(s) 164, 244, 262, 281, 297, 443, 484, 785
MspR9I CCNGG 3 cut(s) 28, 484, 786
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 1 cut(s) 28
MvnI CGCG 3 cut(s) 63, 65, 417
MwoI GCNNNNNNNGC 6 cut(s) 196, 226, 293, 439, 693, 875
NciI CCSGG 2 cut(s) 484, 786
NdeII GATC 6 cut(s) 406, 479, 496, 623, 628, 763
NlaIII CATG 8 cut(s) 199, 241, 253, 592, 610, 702, 706, 1029
NlaIV GGNNCC 3 cut(s) 295, 408, 481
NmuCI GTSAC 4 cut(s) 421, 505, 673, 688
NsbI TGCGCA 1 cut(s) 711
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 2 cut(s) 253, 702
PagI TCATGA 1 cut(s) 237
PaqCI CACCTGC 2 cut(s) 24, 107
PauI GCGCGC 1 cut(s) 63
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 2 cut(s) 90, 258
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 8 cut(s) 192, 432, 435, 648, 868, 906, 948, 1048
PleI GAGTC 1 cut(s) 673
PmaCI CACGTG 1 cut(s) 780
PmlI CACGTG 1 cut(s) 780
PpsI GAGTC 1 cut(s) 673
Ppu21I YACGTR 1 cut(s) 780
PshAI GACNNNNGTC 1 cut(s) 780
Psp124BI GAGCTC 2 cut(s) 110, 467
Psp6I CCWGG 1 cut(s) 26
PspCI CACGTG 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 295, 408, 481
PstI CTGCAG 2 cut(s) 435, 951
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 4 cut(s) 406, 479, 496, 628
PteI GCGCGC 1 cut(s) 63
RsaI GTAC 3 cut(s) 362, 718, 953
RsaNI GTAC 3 cut(s) 361, 717, 952
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 2 cut(s) 110, 467
SaqAI TTAA 3 cut(s) 14, 837, 929
SatI GCNGC 8 cut(s) 191, 431, 434, 647, 867, 905, 947, 1047
Sau3AI GATC 6 cut(s) 406, 479, 496, 623, 628, 763
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 28, 484, 786
SduI GDGCHC 4 cut(s) 50, 110, 467, 977
SfaNI GCATC 3 cut(s) 194, 633, 907
SfcI CTRYAG 2 cut(s) 431, 947
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 3 cut(s) 582, 601, 981
SsiI CCGC 8 cut(s) 180, 190, 646, 659, 866, 869, 878, 914
SspMI CTAG 2 cut(s) 578, 1058
SstI GAGCTC 2 cut(s) 110, 467
StyD4I CCNGG 3 cut(s) 26, 482, 784
StyI CCWWGG 1 cut(s) 577
TaiI ACGT 6 cut(s) 366, 722, 747, 782, 935, 1041
TaqI TCGA 2 cut(s) 979, 1035
TasI AATT 3 cut(s) 582, 601, 981
TatI WGTACW 1 cut(s) 951
TauI GCSGC 3 cut(s) 193, 649, 869
TfiI GAWTC 2 cut(s) 90, 258
Tru1I TTAA 3 cut(s) 14, 837, 929
Tru9I TTAA 3 cut(s) 14, 837, 929
TscAI CASTG 3 cut(s) 55, 481, 824
TseFI GTSAC 4 cut(s) 421, 505, 673, 688
TseI GCWGC 5 cut(s) 430, 433, 904, 946, 1046
Tsp45I GTSAC 4 cut(s) 421, 505, 673, 688
TspDTI ATGAA 2 cut(s) 254, 719
TspGWI ACGGA 2 cut(s) 306, 524
TspRI CASTG 3 cut(s) 55, 481, 824
VneI GTGCAC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 31
XapI RAATTY 1 cut(s) 582
XceI RCATGY 2 cut(s) 253, 702
XmaJI CCTAGG 1 cut(s) 577
XspI CTAG 2 cut(s) 578, 1058
ZraI GACGTC 1 cut(s) 1039
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.