Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

20274098 .. 20275964

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCACTTATTAAGTCCAAGTGTCAGCCACATAGAAATGGTGGTGGCAACTGCCTCAGCTACGGCGACTGGAGCCTCCAACCTCCGATACTCGTCCGGGTTGGATCAACGGCGGCTACGGCCCCAACAGAAGTTCACGAGTTACACTAAATTTGCTATCCACTACCCCAATTGCTTATCTTCCAAAAGGGTAAAAGGGTATTTCCCTATCCGAGCTCTTGACCCTCAAAGAGGAGGCGAGGAAGAAGAAGTGAATTCAAAGGTGGGTAACAATGGCAGCGGTTTGATCTCTGAGGACGATTTGGAATATCTGGGGAAGGTGGTAGCCGGTTCCCTTGTGGCTGCAGCTGTAATAAAGTACGGAAGCATAGTTTTGCCTGAGATAACTAGACCTAACATCGTCCAGGCTCTTGTCATGATTATCATGCCTGTTGTTGTAGCTGTTTTGCTTTTGATCAAGCAAAGCCGTGCGGAGGGACGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.42

Weight (kDa)

9.48

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 279, 470
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	149, 253
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	230, 472
AgsI	TTSAA	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	5 cut(s)	59, 215, 347, 440, 483
AluI	AGCT	5 cut(s)	59, 215, 347, 440, 483
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	276, 341, 344
ApoI	RAATTY	2 cut(s)	149, 253
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	288, 328, 356
BceAI	ACGGC	4 cut(s)	78, 125, 134, 450
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	2 cut(s)	387, 484
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	4 cut(s)	113, 277, 342, 345
BlsI	GCNGC	4 cut(s)	114, 278, 343, 346
Bme1390I	CCNGG	2 cut(s)	97, 404
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	73, 122, 331
BmrFI	CCNGG	2 cut(s)	97, 404
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 472
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	2 cut(s)	230, 472
BseMII	CTCAG	3 cut(s)	69, 282, 369
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	288, 328, 356
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	96, 327
BslI	CCNNNNNNNGG	2 cut(s)	230, 472
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	103, 285, 453
BspACI	CCGC	3 cut(s)	112, 279, 470
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	68, 283, 370
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	73, 122, 331
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	3 cut(s)	103, 285, 453
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	55, 291, 378
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstKTI	GATC	3 cut(s)	106, 288, 456
BstMBI	GATC	3 cut(s)	103, 285, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 118
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	95, 402
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	288, 328, 356
BsuRI	GGCC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	415, 424
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	55, 291, 378
DpnI	GATC	3 cut(s)	105, 287, 455
DpnII	GATC	3 cut(s)	103, 285, 453
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	418, 427
FaiI	YATR	4 cut(s)	32, 368, 416, 425
FatI	CATG	2 cut(s)	414, 423
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	113, 277, 342, 345
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	4 cut(s)	113, 277, 342, 345
FspBI	CTAG	2 cut(s)	387, 484
GluI	GCNGC	4 cut(s)	113, 277, 342, 345
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	96, 327
Hin1II	CATG	2 cut(s)	418, 427
HpaII	CCGG	2 cut(s)	96, 327
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	86, 212, 292
Hpy188III	TCNNGA	3 cut(s)	136, 218, 415
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	4, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 118
HpyF3I	CTNAG	3 cut(s)	55, 291, 378
Hsp92II	CATG	2 cut(s)	418, 427
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	103, 285, 453
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	54, 109, 296, 340, 389, 390, 416, 441
Lsp1109I	GCAGC	3 cut(s)	288, 328, 356
MaeI	CTAG	2 cut(s)	387, 484
MaeIII	GTNAC	2 cut(s)	140, 266
MalI	GATC	3 cut(s)	105, 287, 455
MboI	GATC	3 cut(s)	103, 285, 453
MboII	GAAGA	3 cut(s)	171, 254, 257
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	149, 169, 253
MmeI	TCCRAC	2 cut(s)	81, 102
MnlI	CCTC	9 cut(s)	64, 85, 92, 224, 227, 232, 234, 286, 466
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	2 cut(s)	279, 347
MspI	CCGG	2 cut(s)	96, 327
MspR9I	CCNGG	2 cut(s)	97, 404
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	71, 118
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	103, 285, 453
NlaIII	CATG	2 cut(s)	418, 427
NlaIV	GGNNCC	3 cut(s)	73, 122, 331
PagI	TCATGA	1 cut(s)	414
PkrI	GCNGC	4 cut(s)	114, 278, 343, 346
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	3 cut(s)	73, 122, 331
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	113, 277, 342, 345
Sau3AI	GATC	3 cut(s)	103, 285, 453
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	97, 404
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	61, 84, 217, 264, 321, 349, 394, 442, 485
SfcI	CTRYAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	149, 169, 253
SsiI	CCGC	3 cut(s)	112, 279, 470
SspMI	CTAG	2 cut(s)	387, 484
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	95, 402
TasI	AATT	3 cut(s)	149, 169, 253
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseI	GCWGC	3 cut(s)	276, 341, 344
TspGWI	ACGGA	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	149, 253
XspI	CTAG	2 cut(s)	387, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.