Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

25899403 .. 25900936

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGGCTTTCATTCACGAAGCTGTTCAGCCGTCTGTTTGCGAAGAAGGAGATGCGTATTCTGATGGTGGGTCTCGATGCGGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATTCCCACCATTGGATTCAATGTGGAGACTGTGGAATACAAGAACATCAGCTTTACTGTGTGGGATGTCGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCATTACTTCCAAAACACACAAGGACTTATCTTTGTGGTTGACAGCAACGATCGTGACCGTGTGGTGGAAGCCAGAGATGAGCTTCATAGAATGTTGAATGAGGATGAATTGAGGGAGGCTGTGCTTCTTGTATTTGCAAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCTGAAATAACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTATATCCAGAGCACATGCGCCACTTCTGGTGAAGGACTGTACGAGGGTCTTGACTGGCTCTCAAACAATATTGCAAACAAGGTGGACTCATGCTCTCATACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

6.21

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.5e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	6.6e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	9.2e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 173	6.6e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.8e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	44 - 111	6.6e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	146, 301
AgsI	TTSAA	2 cut(s)	154, 334
AluBI	AGCT	6 cut(s)	22, 109, 115, 186, 319, 427
AluI	AGCT	6 cut(s)	22, 109, 115, 186, 319, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	77, 155
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	407
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	121, 500
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	58, 104
BceAI	ACGGC	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	77, 155
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	81, 408
BlsI	GCNGC	2 cut(s)	82, 409
BmsI	GCATC	2 cut(s)	42, 67
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 301
Bse1I	ACTGG	2 cut(s)	461, 518
BseGI	GGATG	3 cut(s)	96, 205, 346
BseLI	CCNNNNNNNGG	2 cut(s)	146, 301
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	146, 301
BsmAI	GTCTC	2 cut(s)	77, 155
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	123, 219, 286, 385
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	461, 518
BssMI	GATC	4 cut(s)	123, 219, 286, 385
Bst4CI	ACNGT	4 cut(s)	166, 193, 296, 498
BstF5I	GGATG	3 cut(s)	96, 205, 346
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	4 cut(s)	126, 222, 289, 388
BstMAI	GTCTC	2 cut(s)	77, 155
BstMBI	GATC	4 cut(s)	123, 219, 286, 385
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	96, 205, 346
BtsIMutI	CAGTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	3 cut(s)	400, 474, 549
CviQI	GTAC	1 cut(s)	499
DpnI	GATC	4 cut(s)	125, 221, 288, 387
DpnII	GATC	4 cut(s)	123, 219, 286, 385
Eco31I	GGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	403, 477, 552
FaiI	YATR	6 cut(s)	324, 401, 462, 475, 550, 558
FatI	CATG	3 cut(s)	399, 473, 548
Fnu4HI	GCNGC	2 cut(s)	81, 408
FokI	GGATG	3 cut(s)	83, 212, 353
Fsp4HI	GCNGC	2 cut(s)	81, 408
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	81, 408
HaeIII	GGCC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	403, 477, 552
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	2 cut(s)	277, 449
HindII	GTYRAC	2 cut(s)	277, 449
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	2 cut(s)	150, 545
HphI	GGTGA	2 cut(s)	121, 500
Hpy166II	GTNNAC	3 cut(s)	277, 449, 544
Hpy188I	TCNGA	3 cut(s)	63, 224, 566
Hpy188III	TCNNGA	6 cut(s)	16, 74, 212, 290, 466, 509
Hpy8I	GTNNAC	3 cut(s)	277, 449, 544
HpyAV	CCTTC	3 cut(s)	40, 443, 485
HpyCH4III	ACNGT	4 cut(s)	166, 193, 296, 498
HpyCH4V	TGCA	2 cut(s)	374, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	403, 477, 552
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	123, 219, 286, 385
LpnPI	CCDG	7 cut(s)	69, 197, 322, 442, 471, 479, 499
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	42, 67
MaeIII	GTNAC	2 cut(s)	127, 290
MalI	GATC	4 cut(s)	125, 221, 288, 387
MboI	GATC	4 cut(s)	123, 219, 286, 385
MboII	GAAGA	2 cut(s)	55, 380
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	110, 228, 331, 342, 346, 452, 496
MroXI	GAANNNNTTC	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	4 cut(s)	123, 219, 286, 385
NlaIII	CATG	3 cut(s)	403, 477, 552
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	127, 290
NspI	RCATGY	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	82, 409
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	219, 385
PvuI	CGATCG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SatI	GCNGC	2 cut(s)	81, 408
Sau3AI	GATC	4 cut(s)	123, 219, 286, 385
SchI	GAGTC	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	24, 111, 117, 188, 229, 321, 429, 543
SfaNI	GCATC	2 cut(s)	42, 67
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	529
TaaI	ACNGT	4 cut(s)	166, 193, 296, 498
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 290
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	127, 290
TspDTI	ATGAA	3 cut(s)	311, 357, 416
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	461
XceI	RCATGY	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.