Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

8057172 .. 8058760

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATTCATTCCCTGCTTTTTCAGGCGCCACTAAATCTGGTGGAAATCATGTTGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAACGGAGGCCTTTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGGTGAAGACCCTAAATAGGGATCATGGGTATCCATTGCGTGTGGTTGTACCTGGTGTTATTGGCACCCATTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTAAGGGCTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTTAGTAAACTGGGATAACATTAATTGGTCCACCAAGAGGCTACAAATGGATTTTCCTGTCCAGTGTGGAATTTGTTCTTCAGATGATGTGAATGCTGTAAAGCCTGGAAAGGTTAGTTCTATTTGCAAACTGCAATATTTTCCTTCTCTTTATGCAATTGAATATATCTATTGTTTACTTCACATTATGGCATGCACAAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

6.07

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	12 - 100	1.5e-24	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 239
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	226, 436
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	94, 126
ApoI	RAATTY	1 cut(s)	402
AseI	ATTAAT	2 cut(s)	270, 354
Asp700I	GAANNNNTTC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	26, 239
BbsI	GAAGAC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	228, 438
BciVI	GTATCC	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	228, 438
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	2 cut(s)	28, 241
BmrFI	CCNGG	2 cut(s)	228, 438
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
Bse1I	ACTGG	2 cut(s)	347, 394
Bse3DI	GCAATG	2 cut(s)	209, 276
BseBI	CCWGG	2 cut(s)	228, 438
BseLI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
BseMI	GCAATG	2 cut(s)	209, 276
BseNI	ACTGG	2 cut(s)	347, 394
BseRI	GAGGAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	96, 128
BshNI	GGYRCC	2 cut(s)	26, 239
BslI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	96, 128
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	96, 128
BspLI	GGNNCC	2 cut(s)	28, 241
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	26, 239
BsrDI	GCAATG	2 cut(s)	209, 276
BsrI	ACTGG	2 cut(s)	347, 394
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	228, 438
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	2 cut(s)	228, 438
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	226, 436
BstV2I	GAAGAC	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	96, 128
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	50, 200, 525
CviJI	RGCY	7 cut(s)	96, 128, 135, 259, 297, 373, 436
CviKI_1	RGCY	7 cut(s)	96, 128, 135, 259, 297, 373, 436
CviQI	GTAC	1 cut(s)	224
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	226, 436
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	3 cut(s)	53, 203, 528
FaiI	YATR	8 cut(s)	51, 162, 201, 305, 486, 498, 521, 526
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	49, 199, 524
GlaI	GCGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	96, 128
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	53, 203, 528
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	5, 121, 263
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	340, 363, 509
Hpy188I	TCNGA	1 cut(s)	415
Hpy8I	GTNNAC	3 cut(s)	340, 363, 509
HpyAV	CCTTC	1 cut(s)	486
HpyCH4V	TGCA	6 cut(s)	281, 307, 459, 466, 488, 528
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	53, 203, 528
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	196
LweI	GCATC	1 cut(s)	116
MabI	ACCWGGT	1 cut(s)	226
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	193, 402
MfeI	CAATTG	1 cut(s)	489
MluCI	AATT	4 cut(s)	111, 355, 402, 489
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	76, 86, 169, 277, 363
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	3 cut(s)	252, 270, 354
MspR9I	CCNGG	2 cut(s)	228, 438
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	228, 438
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	53, 203, 528
NlaIV	GGNNCC	2 cut(s)	28, 241
NspI	RCATGY	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	5, 121, 263
PluTI	GGCGCC	1 cut(s)	30
PshBI	ATTAAT	2 cut(s)	270, 354
Psp6I	CCWGG	2 cut(s)	226, 436
PspGI	CCWGG	2 cut(s)	226, 436
PspN4I	GGNNCC	2 cut(s)	28, 241
PspPI	GGNCC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	252, 270, 354
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	228, 438
SetI	ASST	6 cut(s)	77, 180, 229, 334, 447, 539
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	360
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	4 cut(s)	111, 355, 402, 489
SseBI	AGGCCT	1 cut(s)	96
SspDI	GGCGCC	1 cut(s)	26
SspI	AATATT	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	226, 436
TasI	AATT	4 cut(s)	111, 355, 402, 489
TfiI	GAWTC	3 cut(s)	5, 121, 263
Tru1I	TTAA	3 cut(s)	252, 270, 354
Tru9I	TTAA	3 cut(s)	252, 270, 354
TscAI	CASTG	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	360
VspI	ATTAAT	2 cut(s)	270, 354
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.