Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Forward (+)

13200291 .. 13201334

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGGAGATTCGTATCATTTTGGATGACGACGGTCCCAGCCCGGCCTCTAACGGTGATGCTGCGGTGGTTACTAGTCTGAAGACCAAGCTCCGAGCCCGGCTTAATTTGCCGGTCAAGTTCCCTCAGTTCTTTACTGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

47

Amino Acids

5.18

Weight (kDa)

6.02

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	98
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	41, 97
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	41, 97
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	72, 142
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	41, 97
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	41, 97
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	41, 97
BsaBI	GATNNNNATC	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	126, 137
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	41, 97, 110
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	127, 136
BspLI	GGNNCC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	32, 53
BstDEI	CTNAG	2 cut(s)	123, 135
BstF5I	GGATG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	39, 95
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	32
CviJI	RGCY	5 cut(s)	39, 44, 88, 95, 100
CviKI_1	RGCY	5 cut(s)	39, 44, 88, 95, 100
DdeI	CTNAG	2 cut(s)	123, 135
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	97
FaqI	GGGAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	72, 142
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	41, 97, 110
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	41, 97, 110
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	78, 92
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	32, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	123, 135
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	49, 54, 110, 123
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	72, 142
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	2 cut(s)	55, 132
MseI	TTAA	1 cut(s)	102
MspI	CCGG	3 cut(s)	41, 97, 110
MspR9I	CCNGG	2 cut(s)	41, 97
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	41, 97
NlaIV	GGNNCC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	61
PshAI	GACNNNNGTC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	41, 97
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	72, 142
StyD4I	CCNGG	2 cut(s)	39, 95
TaaI	ACNGT	2 cut(s)	32, 53
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	2 cut(s)	72, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.