Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

28226114 .. 28227741

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTGTTAAGGTGGGAAGAATGGTGGATTGGGTCAGACGGGCATGGCAGCCCTCTGAAGATCAATTCTTGTCTGTCACACCAGTTTGGATGTTGTGGTCTTCATGCGCACTTTCATCTTCAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTCTTGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAATACCATTTCATCATATCGTATCTGGGTTCATGATTCAAGGCGGAGAAATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAAGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCAAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

9.3

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	54 - 155	1.3e-21	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	386
AciI	CCGC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	120, 147
AfaI	GTAC	2 cut(s)	201, 400
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	299, 376
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AlwNI	CAGNNNCTG	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	332, 424, 445
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	4, 317
BfuAI	ACCTGC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	341
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	191, 403, 444
BstF5I	GGATG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	200, 399
CviAII	CATG	5 cut(s)	87, 147, 292, 317, 392
CviJI	RGCY	2 cut(s)	94, 438
CviKI_1	RGCY	2 cut(s)	94, 438
CviQI	GTAC	2 cut(s)	200, 399
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	120, 147
FaeI	CATG	5 cut(s)	90, 150, 295, 320, 395
FatI	CATG	5 cut(s)	86, 146, 291, 316, 391
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	92
FspAI	RTGCGCAY	1 cut(s)	151
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	90, 150, 295, 320, 395
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	295, 338, 428
HphI	GGTGA	3 cut(s)	332, 424, 445
Hpy188I	TCNGA	3 cut(s)	32, 80, 100
Hpy188III	TCNNGA	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	3 cut(s)	191, 403, 444
HpyCH4V	TGCA	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	90, 150, 295, 320, 395
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	138, 150, 179, 270, 381, 438
Lsp1109I	GCAGC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	4 cut(s)	72, 113, 135, 153
MluCI	AATT	3 cut(s)	107, 171, 370
MnlI	CCTC	2 cut(s)	26, 106
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	51, 234
MslI	CAYNNNNRTG	2 cut(s)	321, 390
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	5 cut(s)	90, 150, 295, 320, 395
NmuCI	GTSAC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	151
NspI	RCATGY	1 cut(s)	395
PagI	TCATGA	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	295, 338, 428
PkrI	GCNGC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	201, 400
RsaNI	GTAC	2 cut(s)	200, 399
RseI	CAYNNNNRTG	2 cut(s)	321, 390
SaqAI	TTAA	2 cut(s)	51, 234
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	7 cut(s)	57, 169, 198, 226, 232, 400, 427
SmiMI	CAYNNNNRTG	2 cut(s)	321, 390
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	3 cut(s)	107, 171, 370
SsiI	CCGC	1 cut(s)	303
SspI	AATATT	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	191, 403, 444
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	107, 171, 370
TfiI	GAWTC	3 cut(s)	295, 338, 428
Tru1I	TTAA	2 cut(s)	51, 234
Tru9I	TTAA	2 cut(s)	51, 234
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	7 cut(s)	56, 135, 147, 260, 280, 305, 351
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.