RchiOBHm_Chr2g0127151

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001919
Physical Location & Seq
Forward (+)
41924511 .. 41926812
2302 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGGACGACATATTCGGAGAGTCTCTGAACTTCGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATCGCTGGAAAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAGGTCGGTGAGGAGCTAGGGTTCTACAAGGGTTGCGTGGAGGTATGGAACTCTGCGGTCCGGGTTGACCCAACCAGGTTCTCGACTCGGGTCCAGAAGGGCGTGAAGCAGATGGAGGAGTTGGTGGAGAGGTACCCAGTTATGGAACCTGAGAATGAGAGCGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAAGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTACCAAGGGTACCCGAGAGCTTCATCTTCTGGGGCTAAAGACGTTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

4.87

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 19 - 57 1.6e-08 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 264, 375
AccB1I GGYRCC 2 cut(s) 264, 375
AciI CCGC 2 cut(s) 188, 335
AclWI GGATC 1 cut(s) 34
AfaI GTAC 3 cut(s) 266, 368, 377
AfiI CCNNNNNNNGG 2 cut(s) 124, 274
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 2 cut(s) 104, 206
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 148, 386
AluI AGCT 2 cut(s) 148, 386
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 2 cut(s) 219, 379
AoxI GGCC 4 cut(s) 67, 79, 102, 115
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 264, 375
AspS9I GGNCC 3 cut(s) 115, 190, 223
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 2 cut(s) 219, 379
AvaII GGWCC 2 cut(s) 190, 223
BanI GGYRCC 2 cut(s) 264, 375
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 106, 208
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 106, 194, 208
Bme18I GGWCC 2 cut(s) 190, 223
BmeT110I CYCGRG 2 cut(s) 219, 379
BmgT120I GGNCC 3 cut(s) 115, 190, 223
BmiI GGNNCC 4 cut(s) 224, 266, 279, 377
BmrFI CCNGG 3 cut(s) 106, 194, 208
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 274
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 106, 208
BseDI CCNNGG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 124, 274
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 113, 158, 263
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 4 cut(s) 69, 81, 104, 117
BshNI GGYRCC 2 cut(s) 264, 375
BsiHKCI CYCGRG 2 cut(s) 219, 379
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 124, 274
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 69, 81, 104, 117
BsoBI CYCGRG 2 cut(s) 219, 379
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 39, 84
BspACI CCGC 2 cut(s) 188, 335
BspANI GGCC 4 cut(s) 69, 81, 104, 117
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 224, 266, 279, 377
BspPI GGATC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 264, 375
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 39, 84
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 106, 208
Bst6I CTCTTC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 282
BstKTI GATC 2 cut(s) 42, 87
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 39, 84
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 2 cut(s) 106, 208
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 104, 192, 206
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 4 cut(s) 69, 81, 104, 117
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 115, 190, 223
CpoI CGGWCCG 1 cut(s) 190
CsiI ACCWGGT 1 cut(s) 206
Csp6I GTAC 3 cut(s) 265, 367, 376
CspI CGGWCCG 1 cut(s) 190
CviJI RGCY 9 cut(s) 57, 69, 81, 104, 117, 129, 148, 386, 401
CviKI_1 RGCY 9 cut(s) 57, 69, 81, 104, 117, 129, 148, 386, 401
CviQI GTAC 3 cut(s) 265, 367, 376
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 41, 86
DpnII GATC 2 cut(s) 39, 84
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 190, 223
Eco88I CYCGRG 2 cut(s) 219, 379
EcoRII CCWGG 2 cut(s) 104, 206
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaiI YATR 3 cut(s) 11, 178, 275
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 113, 145
FspBI CTAG 1 cut(s) 149
HaeIII GGCC 4 cut(s) 69, 81, 104, 117
HapII CCGG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 20, 217
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 17, 27
Hpy188III TCNNGA 2 cut(s) 214, 226
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 59, 223
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 408
KpnI GGTACC 2 cut(s) 268, 379
Kzo9I GATC 2 cut(s) 39, 84
LmnI GCTCC 1 cut(s) 145
MabI ACCWGGT 1 cut(s) 206
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 408
MalI GATC 2 cut(s) 41, 86
MboI GATC 2 cut(s) 39, 84
MboII GAAGA 2 cut(s) 47, 384
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 359
MlyI GAGTC 2 cut(s) 29, 211
MseI TTAA 1 cut(s) 330
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 3 cut(s) 106, 194, 208
MvaI CCWGG 2 cut(s) 106, 208
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 39, 84
NlaIV GGNNCC 4 cut(s) 224, 266, 279, 377
NspV TTCGAA 1 cut(s) 33
PleI GAGTC 2 cut(s) 28, 211
PpsI GAGTC 2 cut(s) 28, 211
PshAI GACNNNNGTC 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 104, 206
PspGI CCWGG 2 cut(s) 104, 206
PspN4I GGNNCC 4 cut(s) 224, 266, 279, 377
PspPI GGNCC 3 cut(s) 115, 190, 223
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 266, 368, 377
RsaNI GTAC 3 cut(s) 265, 367, 376
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 39, 84
Sau96I GGNCC 3 cut(s) 115, 190, 223
SchI GAGTC 2 cut(s) 29, 211
ScrFI CCNGG 3 cut(s) 106, 194, 208
SexAI ACCWGGT 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 2 cut(s) 190, 223
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 359
SsiI CCGC 2 cut(s) 188, 335
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 3 cut(s) 104, 192, 206
StyI CCWWGG 1 cut(s) 370
TaiI ACGT 1 cut(s) 411
TaqI TCGA 4 cut(s) 33, 60, 132, 215
TasI AATT 1 cut(s) 359
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 190, 223
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.