Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Reverse (-)

72428587 .. 72429956

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTATACATCTTGATCCTAGCCACCATCCACTCTTGTGTCATCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCGTCTCAAGGCTTCATCATTCATCCTTCAAGGTTACATGCCACTATTGAAGACTACTGGTGTTCTAGTCCTTGTGGCTGCCCTAAGTGAACTCAAATTGAGCCCTTTAAACCTTATTATAGGTGGTACAAAACAGATTCAAGAAATGATAAACTTTTATGCGGCTCACAAGATATATCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAAGCTATTGAGAGGCTCATAAACAAGGATGTCAAGTATCGTTTTGTGGTAGATATTGAAAATTCCCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

123

Amino Acids

14.0

Weight (kDa)

9.44

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	10, 78
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	6 cut(s)	67, 77, 113, 133, 224, 356
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	10, 78
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	20, 48, 149
BisI	GCNGC	2 cut(s)	162, 246
BlsI	GCNGC	2 cut(s)	163, 247
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	145
BseGI	GGATG	4 cut(s)	27, 42, 105, 331
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	15, 70
BspACI	CCGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	10, 78
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	15, 70
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	4 cut(s)	27, 42, 105, 331
BstKTI	GATC	2 cut(s)	18, 73
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	15, 70
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	27, 42, 105, 331
Cac8I	GCNNGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	23, 95, 161, 186, 248, 302, 313
CviKI_1	RGCY	7 cut(s)	23, 95, 161, 186, 248, 302, 313
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	17, 72
DpnII	GATC	2 cut(s)	15, 70
DraI	TTTAAA	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	1 cut(s)	124
FaiI	YATR	8 cut(s)	7, 122, 203, 243, 259, 269, 291, 317
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	162, 246
FokI	GGATG	4 cut(s)	14, 29, 92, 338
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	162, 246
FspBI	CTAG	3 cut(s)	20, 48, 149
GluI	GCNGC	2 cut(s)	162, 246
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	13, 224
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	15, 70
LpnPI	CCDG	1 cut(s)	126
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	20, 48, 149
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	17, 72
MboI	GATC	2 cut(s)	15, 70
MboII	GAAGA	4 cut(s)	63, 65, 74, 145
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	3 cut(s)	179, 282, 358
MnlI	CCTC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	36
NdeII	GATC	2 cut(s)	15, 70
NlaIII	CATG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	163, 247
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	162, 246
Sau3AI	GATC	2 cut(s)	15, 70
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	118, 198, 208, 304
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	179, 282, 358
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	3 cut(s)	20, 48, 149
TasI	AATT	3 cut(s)	179, 282, 358
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	87, 94, 312
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	20, 48, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.