RchiOBHm_Chr4g0411721

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
35603101 .. 35605582
2482 bp
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UTR
Exon/CDS
Intron
PRQ38248

Sequence Viewer

Length: 453 bp
ATGAGAGAGGCAGCAAATCAACTAAAAGGCTCTGCTACTACAGAAAGTGCTTTTCCTCCACGCATTTCCTCAGCAAAAGTATGGCACACCAGAACAGGATGCACTGAGAAGGGATCTATCTATCAACAGTGTACAGCTTATTTTACAATATCAAATGCCAAATCCATTGAAGATTGGACTAATAGAGGAATTGAAGATCTAAAATGTGGGAAAATTGTTGCTCCTTTACCACCAAACGATACATTTATGGAGGATCCGCTATGCGCGAGTTCTTCAAGCTATCCGTTTTGGTTCAGATTCATACTCGATGAAAAACTAAAGGAAGCTTCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCAAATTGGAGCTGAGATTGATCTGATGATCTCTGGAAACCAGCCTGTACGTCCAAGCTATGACCTATATATGTGA

Protein Analysis

150

Amino Acids

16.68

Weight (kDa)

5.47

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 257
AclWI GGATC 3 cut(s) 121, 248, 261
AfaI GTAC 2 cut(s) 133, 426
AgsI TTSAA 3 cut(s) 170, 194, 276
AluBI AGCT 7 cut(s) 137, 279, 326, 350, 362, 389, 435
AluI AGCT 7 cut(s) 137, 279, 326, 350, 362, 389, 435
AlwI GGATC 3 cut(s) 121, 248, 261
ApeKI GCWGC 2 cut(s) 11, 350
AspLEI GCGC 1 cut(s) 266
BamHI GGATCC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 23, 337
BfmI CTRYAG 1 cut(s) 39
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 12, 351
BlsI GCNGC 2 cut(s) 13, 352
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 70
BseGI GGATG 1 cut(s) 104
BseMII CTCAG 3 cut(s) 84, 96, 381
BseXI GCAGC 2 cut(s) 23, 337
Bsh1236I CGCG 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 5 cut(s) 113, 196, 253, 397, 405
BspACI CCGC 1 cut(s) 257
BspCNI CTCAG 3 cut(s) 83, 97, 382
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 3 cut(s) 121, 248, 261
BsrGI TGTACA 1 cut(s) 131
BssMI GATC 5 cut(s) 113, 196, 253, 397, 405
Bst4CI ACNGT 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 70, 105, 390
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 5 cut(s) 116, 199, 256, 400, 408
BstMBI GATC 5 cut(s) 113, 196, 253, 397, 405
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 23, 337
BstX2I RGATCY 3 cut(s) 113, 196, 253
BstYI RGATCY 3 cut(s) 113, 196, 253
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 102, 134
CfoI GCGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 132, 425
CviJI RGCY 9 cut(s) 30, 137, 279, 326, 350, 362, 389, 421, 435
CviKI_1 RGCY 9 cut(s) 30, 137, 279, 326, 350, 362, 389, 421, 435
CviQI GTAC 2 cut(s) 132, 425
DdeI CTNAG 3 cut(s) 70, 105, 390
DpnI GATC 5 cut(s) 115, 198, 255, 399, 407
DpnII GATC 5 cut(s) 113, 196, 253, 397, 405
FaiI YATR 8 cut(s) 82, 248, 262, 302, 438, 445, 447, 449
Fnu4HI GCNGC 2 cut(s) 12, 351
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 12, 351
GlaI GCGC 1 cut(s) 265
GluI GCNGC 2 cut(s) 12, 351
HhaI GCGC 1 cut(s) 266
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 296, 402
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 70, 105, 390
HpySE526I ACGT 1 cut(s) 427
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 5 cut(s) 113, 196, 253, 397, 405
LmnI GCTCC 2 cut(s) 226, 386
LpnPI CCDG 6 cut(s) 81, 103, 346, 396, 431, 435
Lsp1109I GCAGC 2 cut(s) 23, 337
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 427
MalI GATC 5 cut(s) 115, 198, 255, 399, 407
MboI GATC 5 cut(s) 113, 196, 253, 397, 405
MboII GAAGA 3 cut(s) 182, 206, 264
MflI RGATCY 3 cut(s) 113, 196, 253
MluCI AATT 4 cut(s) 189, 213, 366, 381
MnlI CCTC 4 cut(s) 66, 79, 179, 244
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 5 cut(s) 113, 196, 253, 397, 405
NlaIV GGNNCC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 13, 352
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 3 cut(s) 113, 196, 253
RsaI GTAC 2 cut(s) 133, 426
RsaNI GTAC 2 cut(s) 132, 425
SatI GCNGC 2 cut(s) 12, 351
Sau3AI GATC 5 cut(s) 113, 196, 253, 397, 405
SetI ASST 9 cut(s) 139, 281, 328, 352, 364, 391, 430, 437, 444
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 39
Sse9I AATT 4 cut(s) 189, 213, 366, 381
SsiI CCGC 1 cut(s) 257
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 306
TasI AATT 4 cut(s) 189, 213, 366, 381
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 1 cut(s) 297
TscAI CASTG 2 cut(s) 109, 134
TseI GCWGC 2 cut(s) 11, 350
TspDTI ATGAA 3 cut(s) 289, 324, 354
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 109, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.