Rroxscaffold_7G00188640

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
28230662 .. 28231942
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188640.1

Sequence Viewer

Length: 333 bp
ATGCAATACATCAAGATCCTAGCCATCATCCACCCTTGGATCGTCCCTAGAAGATGCTTGCTTTCAAGGATCTTCAAGTTCTTTGTCTCAAGGCTTTGTCATCCATCTTTCATAGTGTGTACCCTCAATCCCAAGCTAGAAAGATCCCTACTTATTCTACACTTACAACTACATTTTGCAGGGTTAAATTGCGCTCTTACTTATAGCGTTGTCAACCCACCGAAGCTTTTTCTTTCCAATAAAGCTGAGAACACCTCTGTACATAACATAAATAAAGATAGAGATAGAGGATCCCCCTGGAAGGAGAAAGATAACCACGAGGCTGACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.83

Weight (kDa)

9.59

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 10, 47, 77, 138, 285, 298
AfaI GTAC 2 cut(s) 121, 261
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 66, 76
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 3 cut(s) 136, 226, 245
AluI AGCT 3 cut(s) 136, 226, 245
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 6 cut(s) 10, 47, 77, 138, 285, 298
AspLEI GCGC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 290
BauI CACGAG 1 cut(s) 317
BccI CCATC 2 cut(s) 32, 112
BciT130I CCWGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 3 cut(s) 20, 48, 137
Bme1390I CCNGG 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 35, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 35, 296
BseGI GGATG 2 cut(s) 27, 100
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 5 cut(s) 15, 39, 69, 143, 290
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 6 cut(s) 10, 47, 77, 138, 285, 298
BsrGI TGTACA 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 35, 296
BssMI GATC 5 cut(s) 15, 39, 69, 143, 290
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 27, 100
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 5 cut(s) 18, 42, 72, 146, 293
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 5 cut(s) 15, 39, 69, 143, 290
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstX2I RGATCY 4 cut(s) 15, 69, 143, 290
BstYI RGATCY 4 cut(s) 15, 69, 143, 290
BtsCI GGATG 2 cut(s) 27, 100
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 120, 260
CviJI RGCY 6 cut(s) 23, 94, 136, 226, 245, 323
CviKI_1 RGCY 6 cut(s) 23, 94, 136, 226, 245, 323
CviQI GTAC 2 cut(s) 120, 260
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 17, 41, 71, 145, 292
DpnII GATC 5 cut(s) 15, 39, 69, 143, 290
Eco130I CCWWGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 4 cut(s) 113, 204, 264, 269
FaqI GGGAC 1 cut(s) 29
FokI GGATG 2 cut(s) 14, 87
FspBI CTAG 3 cut(s) 20, 48, 137
GlaI GCGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 120, 214
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 120, 214
HpyAV CCTTC 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 4, 179
HpyF3I CTNAG 1 cut(s) 246
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 5 cut(s) 15, 39, 69, 143, 290
LpnPI CCDG 3 cut(s) 165, 283, 310
LweI GCATC 1 cut(s) 44
MaeI CTAG 3 cut(s) 20, 48, 137
MalI GATC 5 cut(s) 17, 41, 71, 145, 292
MboI GATC 5 cut(s) 15, 39, 69, 143, 290
MboII GAAGA 2 cut(s) 63, 64
MflI RGATCY 4 cut(s) 15, 69, 143, 290
MluCI AATT 1 cut(s) 187
MnlI CCTC 4 cut(s) 134, 265, 281, 313
MseI TTAA 2 cut(s) 185, 331
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
NdeII GATC 5 cut(s) 15, 39, 69, 143, 290
NlaIV GGNNCC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 4 cut(s) 15, 69, 143, 290
RsaI GTAC 2 cut(s) 121, 261
RsaNI GTAC 2 cut(s) 120, 260
SaqAI TTAA 2 cut(s) 185, 331
Sau3AI GATC 5 cut(s) 15, 39, 69, 143, 290
ScrFI CCNGG 1 cut(s) 298
SetI ASST 4 cut(s) 138, 228, 247, 257
SfaNI GCATC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 187
SspMI CTAG 3 cut(s) 20, 48, 137
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 35
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 259
Tru1I TTAA 2 cut(s) 185, 331
Tru9I TTAA 2 cut(s) 185, 331
TspDTI ATGAA 1 cut(s) 100
XspI CTAG 3 cut(s) 20, 48, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.