Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Reverse (-)

28200259 .. 28210363

Gene Structure 10105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCAATACATCAAGATCCCATCCGCCATCCATCCTTGTGTCATCCCTAGAAGATTGCATGCTTTCAAGGATCTTCAAGTTCTTCATCTCAAGGCTTGTCATCCATCTTTCACGTGCTTGCAAATGGGCCTAAACCACTATGTGGAAGTAGATCATGTCAAAATGGATTTTTCCTCTCGTTTACTGACTTTATTTAGTGGAGGTACCGTCCGGCTGAAGACGTTAAACTCAAGCGCTGCTTGGGAGGCAACCAAATTCGAAGCAATTGTGAAGGATGATGACTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

7.8

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	142
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	10, 78
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	205
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	67, 77
AlwI	GGATC	2 cut(s)	10, 78
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	28, 35, 39, 112
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	74, 214
BsaAI	YACGTR	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseGI	GGATG	6 cut(s)	20, 27, 31, 42, 100, 280
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	15, 70, 151
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	10, 78
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	203
BssMI	GATC	3 cut(s)	15, 70, 151
Bst4CI	ACNGT	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	60, 119
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	6 cut(s)	20, 27, 31, 42, 100, 280
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	18, 73, 154
BstMBI	GATC	3 cut(s)	15, 70, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	15, 70
BstYI	RGATCY	2 cut(s)	15, 70
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	6 cut(s)	20, 27, 31, 42, 100, 280
Cac8I	GCNNGC	2 cut(s)	60, 119
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	59, 155
CviJI	RGCY	3 cut(s)	95, 129, 214
CviKI_1	RGCY	3 cut(s)	95, 129, 214
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	17, 72, 153
DpnII	GATC	3 cut(s)	15, 70, 151
DraIII	CACNNNGTG	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	13
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	114
FaeI	CATG	2 cut(s)	62, 158
FaiI	YATR	3 cut(s)	60, 141, 156
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	58, 154
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	6 cut(s)	7, 14, 18, 29, 87, 287
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	62, 158
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	113, 221
HpyCH4V	TGCA	3 cut(s)	4, 58, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	113, 221
Hsp92II	CATG	2 cut(s)	62, 158
HspAI	GCGC	1 cut(s)	234
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	15, 70, 151
LpnPI	CCDG	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	2 cut(s)	113, 221
MalI	GATC	3 cut(s)	17, 72, 153
MboI	GATC	3 cut(s)	15, 70, 151
MboII	GAAGA	4 cut(s)	63, 65, 74, 229
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	15, 70
MluCI	AATT	2 cut(s)	254, 264
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	184, 194, 238
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	15, 70, 151
NlaIII	CATG	2 cut(s)	62, 158
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	114
PmlI	CACGTG	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	114
PspCI	CACGTG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	15, 70
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	15, 70, 151
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	275
SetI	ASST	3 cut(s)	116, 205, 224
SfuI	TTCGAA	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	89, 229
SmoI	CTYRAG	2 cut(s)	89, 229
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	254, 264
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	116, 224
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	254, 264
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.