Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Forward (+)

27443051 .. 27454509

Gene Structure 11459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAATACATCAAGATCCTAGCCACCATCCACCCTTGTGTCGTCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCGTCTCAAGGCTTGTCATCGATCTTTCACAGTTTTCCATTCTTTGATTGGGAAAGTTCCTAATTGTAGAAATAGTTCGCTTGGAGCCGAGAAGGCCGAGTGGGGATTTAAAGCTTTGAAACAGATTGTGAAGATCTATTATTGTCTCGGAGGTTGCCGGCAATCGAAGTCCGGGTTTGAGTCGGAGAGCGCCGGAGATTGGGTCGGCTACTATTCGTCCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

9.6

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	302
AclWI	GGATC	2 cut(s)	10, 78
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	67, 77, 202
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	92, 233
AlwI	GGATC	2 cut(s)	10, 78
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	256
BccI	CCATC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	92, 233
BfaI	CTAG	2 cut(s)	20, 48
BfoI	RGCGCY	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	103
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	241, 255, 276, 303
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	92, 233
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	15, 70, 104, 216
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	10, 78
BsrFI	RCCGGY	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	240
BssMI	GATC	4 cut(s)	15, 70, 104, 216
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	60, 242
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	4 cut(s)	18, 73, 107, 219
BstMAI	GTCTC	2 cut(s)	92, 233
BstMBI	GATC	4 cut(s)	15, 70, 104, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	254
BstX2I	RGATCY	3 cut(s)	15, 70, 216
BstYI	RGATCY	3 cut(s)	15, 70, 216
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	60, 242
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	103
CviJI	RGCY	6 cut(s)	23, 95, 170, 179, 197, 291
CviKI_1	RGCY	6 cut(s)	23, 95, 170, 179, 197, 291
DpnI	GATC	4 cut(s)	17, 72, 106, 218
DpnII	GATC	4 cut(s)	15, 70, 104, 216
DraI	TTTAAA	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	92
FaqI	GGGAC	1 cut(s)	29
FokI	GGATG	1 cut(s)	14
FspBI	CTAG	2 cut(s)	20, 48
GlaI	GCGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	4 cut(s)	241, 255, 276, 303
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	4 cut(s)	241, 255, 276, 303
Hpy188I	TCNGA	2 cut(s)	233, 268
Hpy188III	TCNNGA	2 cut(s)	13, 303
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HspAI	GCGC	1 cut(s)	273
Kpn2I	TCCGGA	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	240
KroNI	GCCGGC	1 cut(s)	242
Kzo9I	GATC	4 cut(s)	15, 70, 104, 216
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	254, 268, 289
MaeI	CTAG	2 cut(s)	20, 48
MalI	GATC	4 cut(s)	17, 72, 106, 218
MboI	GATC	4 cut(s)	15, 70, 104, 216
MboII	GAAGA	4 cut(s)	63, 65, 74, 226
MflI	RGATCY	3 cut(s)	15, 70, 216
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	4 cut(s)	241, 255, 276, 303
MspR9I	CCNGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	15, 70, 104, 216
NgoMIV	GCCGGC	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	2 cut(s)	196, 205
OliI	CACNNNNGTG	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	142, 174
PsuI	RGATCY	3 cut(s)	15, 70, 216
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	4 cut(s)	15, 70, 104, 216
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	2 cut(s)	199, 238
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	20, 48
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	103, 248
TasI	AATT	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	157
XspI	CTAG	2 cut(s)	20, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.