Rw1G028780

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
56472866 .. 56474063
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028780.1

Sequence Viewer

Length: 321 bp
ATGCAATACATCAATTTCCTAACCGCCATCCACCCTTGTGTCGTCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCATTTCAAGGCTTTATCATTCATCTTTCAAGGTGTACCCTCAATCCCCGGAATAGAACGATCCCTACTTACTTATACTACTAACGACATTTCAGGGTTAAATTGCGAGCTTGCTTCAAGCGACATCAATCTTGAATCTTGGAAGCAAGCCTTCAAGGTGGATGATGGAGGATATGATCTTCACGGCTCCTTCTTCTTCTTCCTCTCCTTGCTTGAAAACGCAGAACTTTGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

5.12

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 2 cut(s) 78, 138
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 8 cut(s) 67, 77, 91, 113, 201, 218, 238, 299
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
AlwI GGATC 2 cut(s) 78, 138
AsuC2I CCSGG 1 cut(s) 132
BccI CCATC 2 cut(s) 35, 242
BceAI ACGGC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 2 cut(s) 48, 319
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 27, 250
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 70, 143, 259
BspACI CCGC 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 2 cut(s) 78, 138
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 70, 143, 259
BstC8I GCNNGC 4 cut(s) 60, 191, 195, 231
BstF5I GGATG 2 cut(s) 27, 250
BstKTI GATC 3 cut(s) 73, 146, 262
BstMBI GATC 3 cut(s) 70, 143, 259
BstSCI CCNGG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsCI GGATG 2 cut(s) 27, 250
Cac8I GCNNGC 4 cut(s) 60, 191, 195, 231
Csp6I GTAC 1 cut(s) 119
CviJI RGCY 4 cut(s) 95, 193, 233, 270
CviKI_1 RGCY 4 cut(s) 95, 193, 233, 270
CviQI GTAC 1 cut(s) 119
DpnI GATC 3 cut(s) 72, 145, 261
DpnII GATC 3 cut(s) 70, 143, 259
FaiI YATR 2 cut(s) 159, 258
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 29
FokI GGATG 2 cut(s) 14, 257
FspBI CTAG 2 cut(s) 48, 319
HapII CCGG 1 cut(s) 132
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 244, 283
HpyCH4V TGCA 2 cut(s) 4, 315
Kzo9I GATC 3 cut(s) 70, 143, 259
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 2 cut(s) 145, 162
MaeI CTAG 2 cut(s) 48, 319
MalI GATC 3 cut(s) 72, 145, 261
MboI GATC 3 cut(s) 70, 143, 259
MboII GAAGA 7 cut(s) 63, 65, 74, 254, 268, 271, 274
MflI RGATCY 1 cut(s) 70
MluCI AATT 2 cut(s) 13, 184
MnlI CCTC 3 cut(s) 133, 245, 296
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 132
NdeII GATC 3 cut(s) 70, 143, 259
NlaIV GGNNCC 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 271
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 3 cut(s) 70, 143, 259
ScrFI CCNGG 1 cut(s) 132
SetI ASST 3 cut(s) 118, 195, 243
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 2 cut(s) 13, 184
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 48, 319
StyD4I CCNGG 1 cut(s) 130
TasI AATT 2 cut(s) 13, 184
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 74, 94
XspI CTAG 2 cut(s) 48, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.