Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Forward (+)

30328271 .. 30329299

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGGATCTGCTACGAGTTCTTCGAGCTATCCGTTTTGGCGCAAGGTTTGGATTCATACTCGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAAAGAGCGAATTGGAGCTGAAATTCATCTGATGATCTCTGGAAACCAACCTGTCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCACAGTGTGAGCCATCAGAAGGATGCGACAGGAGCTCTTTGGTGGTTGTGATTGCAGTTACTGGTTTATCTTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

106

Amino Acids

11.71

Weight (kDa)

5.62

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	7 cut(s)	29, 83, 107, 119, 146, 188, 276
AluI	AGCT	7 cut(s)	29, 83, 107, 119, 146, 188, 276
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	83, 86, 107
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	220, 227
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	70, 73, 94
BccI	CCATC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	84, 87, 108
BlsI	GCNGC	3 cut(s)	85, 88, 109
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	220, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	307
BseGI	GGATG	2 cut(s)	238, 269
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	70, 73, 94
BsiHKAI	GWGCWC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	7, 162
BspPI	GGATC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	7, 162
Bst4CI	ACNGT	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	238, 269
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	10, 165
BstMBI	GATC	2 cut(s)	7, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 273
BstV1I	GCAGC	3 cut(s)	70, 73, 94
BstV2I	GAAGAC	2 cut(s)	220, 227
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	238, 269
BtsIMutI	CAGTG	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	44
CviJI	RGCY	8 cut(s)	29, 83, 107, 119, 146, 188, 253, 276
CviKI_1	RGCY	8 cut(s)	29, 83, 107, 119, 146, 188, 253, 276
DpnI	GATC	2 cut(s)	9, 164
DpnII	GATC	2 cut(s)	7, 162
DraIII	CACNNNGTG	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	278
FaiI	YATR	5 cut(s)	59, 191, 198, 200, 202
Fnu4HI	GCNGC	3 cut(s)	84, 87, 108
FokI	GGATG	2 cut(s)	225, 276
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	84, 87, 108
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	84, 87, 108
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	159, 259
Hpy188III	TCNNGA	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 273
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	7, 162
LmnI	GCTCC	2 cut(s)	143, 273
LpnPI	CCDG	5 cut(s)	103, 153, 192, 256, 288
Lsp1109I	GCAGC	3 cut(s)	70, 73, 94
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	203, 298
MalI	GATC	2 cut(s)	9, 164
MboI	GATC	2 cut(s)	7, 162
MboII	GAAGA	3 cut(s)	14, 220, 227
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	123, 138, 150
MseI	TTAA	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	116, 273
NdeII	GATC	2 cut(s)	7, 162
NmuCI	GTSAC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 31
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	85, 88, 109
Psp124BI	GAGCTC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	84, 87, 108
Sau3AI	GATC	2 cut(s)	7, 162
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	254
Sse9I	AATT	3 cut(s)	123, 138, 150
SstI	GAGCTC	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	25, 63
TasI	AATT	3 cut(s)	123, 138, 150
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	83, 86, 107
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	46, 81, 111, 143, 227
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.