Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Forward (+)

17056435 .. 17057579

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGTGGCGGCGGTGCGGACTTTGGTCTGGATCGTTTTTGGTTCGGCGACGGCGGATTGGTTTTCGGGTTTGTTCCAATCGGGTTCGCTGGGTTGGTATAGATCGGGATCTGCAGTCTATCGTCGTGGTGTTCGGTGTAGGGCTTGGCGGTTTTCTGGGCATAGCACCGCTACGAAGACTTCTTGAGAGGGAGAACGGCGGCAGTGAAACTTCTAGAGTGGGAGTCGATCGGCTAGACAGGTCGAGGTACCGGATTCCAGCGAGTATTGCAGGGGATCAAATCCTCTTCGTCTGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

11.7

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AciI	CCGC	7 cut(s)	10, 13, 18, 55, 150, 170, 201
AclWI	GGATC	3 cut(s)	40, 117, 285
AfaI	GTAC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	40, 117, 285
Asp718I	GGTACC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	68, 214
BfaI	CTAG	2 cut(s)	216, 236
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	11, 202
BlsI	GCNGC	2 cut(s)	12, 203
BmiI	GGNNCC	1 cut(s)	251
BoxI	GACNNNNGTC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	108
BseYI	CCCAGC	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	253
Bsp143I	GATC	5 cut(s)	32, 103, 109, 229, 277
BspACI	CCGC	7 cut(s)	10, 13, 18, 55, 150, 170, 201
BspLI	GGNNCC	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	3 cut(s)	40, 117, 285
BspT107I	GGYRCC	1 cut(s)	249
BssMI	GATC	5 cut(s)	32, 103, 109, 229, 277
Bst6I	CTCTTC	1 cut(s)	293
BstKTI	GATC	5 cut(s)	35, 106, 112, 232, 280
BstMBI	GATC	5 cut(s)	32, 103, 109, 229, 277
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstPAI	GACNNNNGTC	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	250
CviJI	RGCY	2 cut(s)	145, 235
CviKI_1	RGCY	2 cut(s)	145, 235
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	5 cut(s)	34, 105, 111, 231, 279
DpnII	GATC	5 cut(s)	32, 103, 109, 229, 277
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	70
FaiI	YATR	2 cut(s)	101, 164
Fnu4HI	GCNGC	2 cut(s)	11, 202
Fsp4HI	GCNGC	2 cut(s)	11, 202
FspBI	CTAG	2 cut(s)	216, 236
GluI	GCNGC	2 cut(s)	11, 202
GsaI	CCCAGC	1 cut(s)	94
HapII	CCGG	1 cut(s)	253
HinfI	GANTC	2 cut(s)	225, 256
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	4 cut(s)	30, 107, 185, 216
Hpy99I	CGWCG	2 cut(s)	54, 128
HpyCH4V	TGCA	2 cut(s)	115, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	32, 103, 109, 229, 277
LpnPI	CCDG	8 cut(s)	15, 76, 143, 226, 258, 266, 273, 280
MaeI	CTAG	2 cut(s)	216, 236
MalI	GATC	5 cut(s)	34, 105, 111, 231, 279
MboI	GATC	5 cut(s)	32, 103, 109, 229, 277
MboII	GAAGA	2 cut(s)	189, 280
MflI	RGATCY	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	3 cut(s)	183, 240, 296
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	5 cut(s)	32, 103, 109, 229, 277
NlaIV	GGNNCC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	12, 203
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshAI	GACNNNNGTC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	109
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SatI	GCNGC	2 cut(s)	11, 202
Sau3AI	GATC	5 cut(s)	32, 103, 109, 229, 277
SchI	GAGTC	1 cut(s)	234
SetI	ASST	2 cut(s)	245, 251
SfcI	CTRYAG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	7 cut(s)	10, 13, 18, 55, 150, 170, 201
SspMI	CTAG	2 cut(s)	216, 236
TaqI	TCGA	2 cut(s)	228, 245
TauI	GCSGC	2 cut(s)	13, 204
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	211
TspRI	CASTG	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	2 cut(s)	216, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.