Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Forward (+)

25534830 .. 25565227

Gene Structure 30398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACCGACACGGCTCCTCATCCGCGGATTCGTTGGCAAAGATTACGCGGTTCGCCAAGGAATCGGAAGAGAACAGGAAGTTTCTCGCCAAGTGCGACGGGTTTGTGGCGCTGCTCGTCGAGGCTCTCGGCGTGGCAAGGGCCGGCGACGGAGGTCATGGGAGCAACAACATTCGCATTCTCGGGCAAATCCGGCTAGCCGAAAGCGTCGAGCTCGGCGACGGAGCACGCGGTGACAATTACGTGGAGCGTGTGCTACTTGTTCAAGGAGCGATTGGCATGAAATGGGCAGGGCGAATCCATGGATGCGTCGACGGGCGGACTAGATTGGAAAGGGAGAGGGACTTGGCGTCGAAGAGGGGTTTGGAGGTCGGAGAGAGTGGAATCGGAGATGGGTTGGGATTGGGTATTGGTGTTGATGCGAGGGTAGAGGGAGGGAGGAGGTGGGTGGAGATGGAGGAATGGGGTCCTTCTTTTGGCTGTGGTGGTTGTGGTGGTTGCACCGCCGACCGTGGTGGCGTTTTGGTGGCCTTCCGTCCATACATCCTAAAAAATATTTCTTATGAAGAGTGCAAGAGCCAGATACAAGTGGAAAATCTTCAAACAATCAGTCCAATTTTCTGCAGAATCAAAACTGGAAAACTGGACCTAGAAGCCATGCAATACATCAATTTCCTAGCCGCCATTCACCCTTGTGTCGTCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCGTCTCAAGGCTTTATCATTCATCTTTCAAGGTTACATTAGTTTAGGTGAAGTAATTACTACAAATCGAACAAAAGTTACCGCTTTTACATCAAGTGTTGTGGGTTGTGATAAAATGCGTAGTCATTGTAAAGTCCATCATCCATCCATTCTACCATCAAAGAGGATTCAAGGAGCATTAAATGAGGAAAATCATGGAAGAGCTAGCCATCAATTTATCAAGCTTCAACTACTACACGAACAGAGCTTATCATTGTCAATTTCAAATCAACGAGAATCACAATCACCGCATTTCAAATCAACGAATCCCAATCACTACACAATCATGCTTGCTACACAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

361

Amino Acids

39.57

Weight (kDa)

8.98

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	3 cut(s)	26, 49, 231
AciI	CCGC	9 cut(s)	24, 26, 49, 231, 319, 504, 681, 822, 1028
AclWI	GGATC	1 cut(s)	735
AcyI	GRCGYC	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	9 cut(s)	266, 602, 724, 734, 770, 911, 968, 1005, 1036
AhdI	GACNNNNNGTC	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	4 cut(s)	214, 944, 964, 987
AluI	AGCT	4 cut(s)	214, 944, 964, 987
Alw21I	GWGCWC	2 cut(s)	216, 229
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	735
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	141, 528
ApeKI	GCWGC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	4, 141, 467, 646
AsuHPI	GGTGA	4 cut(s)	245, 680, 800, 1017
AsuNHI	GCTAGC	2 cut(s)	196, 944
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	4, 467, 646
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	216, 229
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	6 cut(s)	386, 448, 885, 892, 904, 957
BceAI	ACGGC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	6 cut(s)	197, 324, 650, 677, 705, 945
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	2 cut(s)	113, 681
BlsI	GCNGC	2 cut(s)	114, 682
Bme18I	GGWCC	3 cut(s)	4, 467, 646
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	4 cut(s)	4, 141, 467, 646
BmiI	GGNNCC	2 cut(s)	16, 468
BmsI	GCATC	2 cut(s)	296, 409
BmtI	GCTAGC	2 cut(s)	200, 948
BoxI	GACNNNNGTC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	731
BsaAI	YACGTR	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	24, 57, 301, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	640, 648
BseDI	CCNNGG	4 cut(s)	24, 57, 301, 511
BseGI	GGATG	5 cut(s)	20, 311, 543, 880, 884
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	640, 648
BseRI	GAGGAG	2 cut(s)	7, 454
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	26, 49, 231
Bsh1285I	CGRYCG	1 cut(s)	511
BshFI	GGCC	2 cut(s)	143, 530
BsiEI	CGRYCG	1 cut(s)	511
BsiHKAI	GWGCWC	2 cut(s)	216, 229
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	144, 193
BslFI	GGGAC	2 cut(s)	356, 686
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	356, 686
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	143, 530
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	216, 229
Bsp143I	GATC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	9 cut(s)	24, 26, 49, 231, 319, 504, 681, 822, 1028
BspANI	GGCC	2 cut(s)	143, 530
BspFNI	CGCG	3 cut(s)	26, 49, 231
BspHI	TCATGA	1 cut(s)	1082
BspLI	GGNNCC	2 cut(s)	16, 468
BspMAI	CTGCAG	1 cut(s)	626
BspOI	GCTAGC	2 cut(s)	200, 948
BspPI	GGATC	1 cut(s)	735
BspQI	GCTCTTC	1 cut(s)	934
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	640, 648
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	24, 57, 301, 511
BssMI	GATC	1 cut(s)	727
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	2 cut(s)	57, 301
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	4 cut(s)	63, 350, 561, 934
BstACI	GRCGYC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	6 cut(s)	145, 198, 229, 717, 946, 1071
BstDSI	CCRYGG	3 cut(s)	24, 301, 511
BstF5I	GGATG	5 cut(s)	20, 311, 543, 880, 884
BstFNI	CGCG	3 cut(s)	26, 49, 231
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	1 cut(s)	727
BstMCI	CGRYCG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	3 cut(s)	26, 49, 231
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	2 cut(s)	143, 530
BtgI	CCRYGG	3 cut(s)	24, 301, 511
BtsCI	GGATG	5 cut(s)	20, 311, 543, 880, 884
Cac8I	GCNNGC	6 cut(s)	145, 198, 229, 717, 946, 1071
CciI	TCATGA	1 cut(s)	1082
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	4 cut(s)	4, 141, 467, 646
Cfr42I	CCGCGG	1 cut(s)	27
CseI	GACGC	3 cut(s)	196, 298, 339
CspCI	CAANNNNNGTGG	2 cut(s)	822, 857
CviAII	CATG	7 cut(s)	158, 280, 302, 658, 935, 1066, 1083
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
DraIII	CACNNNGTG	1 cut(s)	233
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	4 cut(s)	63, 350, 561, 934
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	4 cut(s)	63, 350, 561, 934
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	57, 301
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	3 cut(s)	4, 467, 646
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	467
EcoT14I	CCWWGG	2 cut(s)	57, 301
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	57, 301
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	7 cut(s)	161, 283, 305, 661, 938, 1069, 1086
FaiI	YATR	9 cut(s)	159, 281, 303, 541, 564, 659, 936, 1067, 1084
FaqI	GGGAC	2 cut(s)	356, 686
FatI	CATG	7 cut(s)	157, 279, 301, 657, 934, 1065, 1082
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	113, 681
FokI	GGATG	5 cut(s)	7, 318, 530, 867, 871
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	113, 681
FspBI	CTAG	6 cut(s)	197, 324, 650, 677, 705, 945
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	113, 681
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	143, 530
HapII	CCGG	2 cut(s)	144, 193
HgaI	GACGC	3 cut(s)	196, 298, 339
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	7 cut(s)	161, 283, 305, 661, 938, 1069, 1086
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	8 cut(s)	29, 62, 297, 384, 627, 907, 1016, 1045
HpaII	CCGG	2 cut(s)	144, 193
HphI	GGTGA	4 cut(s)	245, 680, 800, 1017
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	67, 374, 389
Hpy188III	TCNNGA	1 cut(s)	1083
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	8 cut(s)	101, 122, 152, 212, 224, 314, 317, 355
HpyAV	CCTTC	2 cut(s)	480, 541
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	501, 573, 624, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	7 cut(s)	161, 283, 305, 661, 938, 1069, 1086
HspAI	GCGC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	727
LguI	GCTCTTC	1 cut(s)	934
LmnI	GCTCC	6 cut(s)	20, 162, 224, 247, 269, 914
LpnPI	CCDG	7 cut(s)	61, 157, 206, 276, 593, 621, 629
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	296, 409
MaeI	CTAG	6 cut(s)	197, 324, 650, 677, 705, 945
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	233, 773, 817
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	8 cut(s)	80, 367, 578, 590, 720, 722, 731, 951
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	216, 229
MluCI	AATT	6 cut(s)	238, 615, 670, 795, 953, 999
MmeI	TCCRAC	1 cut(s)	352
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	1 cut(s)	920
MslI	CAYNNNNRTG	3 cut(s)	693, 1064, 1081
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	144, 193
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	3 cut(s)	26, 49, 231
MwoI	GCNNNNNNNGC	1 cut(s)	193
NaeI	GCCGGC	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	1 cut(s)	727
NgoMIV	GCCGGC	1 cut(s)	143
NheI	GCTAGC	2 cut(s)	196, 944
NlaIII	CATG	7 cut(s)	161, 283, 305, 661, 938, 1069, 1086
NlaIV	GGNNCC	2 cut(s)	16, 468
NmeAIII	GCCGAG	2 cut(s)	108, 195
NmuCI	GTSAC	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	693
PagI	TCATGA	1 cut(s)	1082
PciSI	GCTCTTC	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 216
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	8 cut(s)	29, 62, 297, 384, 627, 907, 1016, 1045
PkrI	GCNGC	2 cut(s)	114, 682
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	467
PshAI	GACNNNNGTC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	16, 468
PspPI	GGNCC	4 cut(s)	4, 141, 467, 646
PspPPI	RGGWCCY	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	802, 834
PstI	CTGCAG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	727
RseI	CAYNNNNRTG	3 cut(s)	693, 1064, 1081
SacI	GAGCTC	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	934
SaqAI	TTAA	1 cut(s)	920
SatI	GCNGC	2 cut(s)	113, 681
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	4 cut(s)	4, 141, 467, 646
SduI	GDGCHC	2 cut(s)	216, 229
SfaNI	GCATC	2 cut(s)	296, 409
SfcI	CTRYAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	3 cut(s)	4, 467, 646
SmiMI	CAYNNNNRTG	3 cut(s)	693, 1064, 1081
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	6 cut(s)	238, 615, 670, 795, 953, 999
SsiI	CCGC	9 cut(s)	24, 26, 49, 231, 319, 504, 681, 822, 1028
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	6 cut(s)	197, 324, 650, 677, 705, 945
SstI	GAGCTC	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	57, 301
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	120, 210, 312, 353, 808
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	6 cut(s)	238, 615, 670, 795, 953, 999
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	8 cut(s)	29, 62, 297, 384, 627, 907, 1016, 1045
Tru1I	TTAA	1 cut(s)	920
Tru9I	TTAA	1 cut(s)	920
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	296, 579, 751
TspGWI	ACGGA	3 cut(s)	165, 237, 524
VpaK11BI	GGWCC	3 cut(s)	4, 467, 646
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	6 cut(s)	197, 324, 650, 677, 705, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.