RchiOBHm_Chr4g0412001

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
35740785 .. 35741410
626 bp
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UTR
Exon/CDS
Intron
PRQ38276

Sequence Viewer

Length: 213 bp
ATGGAGGATCCGCTACGCACGAGTTCTTCAAGCTATCCGTTTTGCGCAAGGTTCAGATTCATACTCGATGAACAACTAAAGGAAGCTTCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCAAATTGGAGCTGAGATTGATCTGATGATCTCTGGAAACCAACCTGTACGTCCAAGCTATGACCTATATATGTGA

Protein Analysis

70

Amino Acids

7.89

Weight (kDa)

4.73

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 2, 15
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 6 cut(s) 33, 86, 110, 122, 149, 195
AluI AGCT 6 cut(s) 33, 86, 110, 122, 149, 195
AlwI GGATC 2 cut(s) 2, 15
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 47
BamHI GGATCC 1 cut(s) 7
BauI CACGAG 1 cut(s) 19
BbvI GCAGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 9
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 97
Bsp143I GATC 3 cut(s) 7, 157, 165
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 2, 15
BssMI GATC 3 cut(s) 7, 157, 165
BssSI CACGAG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 10, 160, 168
BstMBI GATC 3 cut(s) 7, 157, 165
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 6 cut(s) 33, 86, 110, 122, 149, 195
CviKI_1 RGCY 6 cut(s) 33, 86, 110, 122, 149, 195
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 9, 159, 167
DpnII GATC 3 cut(s) 7, 157, 165
FaiI YATR 5 cut(s) 62, 198, 205, 207, 209
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 56, 162
Hpy188III TCNNGA 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 187
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 7, 157, 165
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 106, 156, 195
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 1 cut(s) 187
MalI GATC 3 cut(s) 9, 159, 167
MboI GATC 3 cut(s) 7, 157, 165
MboII GAAGA 1 cut(s) 18
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 126, 141
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 3 cut(s) 7, 157, 165
NlaIV GGNNCC 1 cut(s) 9
NsbI TGCGCA 1 cut(s) 46
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 7, 157, 165
SgeI CNNG 9 cut(s) 31, 33, 42, 60, 77, 105, 183, 194, 204
Sse9I AATT 2 cut(s) 126, 141
SsiI CCGC 1 cut(s) 11
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 126, 141
TfiI GAWTC 1 cut(s) 57
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 49, 84, 114
TspGWI ACGGA 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.