Rroxscaffold_4G00320210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003963
Physical Location & Seq
Forward (+)
48730778 .. 48734404
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320210.1

Sequence Viewer

Length: 279 bp
ATGCAATACATCAAGATCCCATCTGCCATCCACCCTTGTGTCATCCCTAGAAGATTGCTTGCTTTCAAGGATCTCCAAGTTCTTCGTCTCAAGGCTTTGTCATCCATCTTTCATGGCCGCAGCAAAATGAAGAGGAGCCTGAGCTATCACATCCGAAGTCTAGCCTCTGTCCTTGGCAGTGTCTGCGCAAATCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTGTGCTGCAAAATCAATTTGCTTAATATTGATTTTGAAATATGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

9.9

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 187
AciI CCGC 1 cut(s) 118
AclWI GGATC 2 cut(s) 10, 78
AcoI YGGCCR 1 cut(s) 115
AgsI TTSAA 2 cut(s) 67, 266
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 10, 78
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 120, 234
AspLEI GCGC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 132, 221
BccI CCATC 3 cut(s) 28, 35, 113
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 48, 161
BisI GCNGC 3 cut(s) 118, 121, 235
BlsI GCNGC 3 cut(s) 119, 122, 236
BmiI GGNNCC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 4 cut(s) 27, 42, 101, 150
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 132, 221
BshFI GGCC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 15, 70
BspACI CCGC 1 cut(s) 118
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 10, 78
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 15, 70
BssT1I CCWWGG 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 27, 42, 101, 150
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 18, 73
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 15, 70
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 132, 221
BstX2I RGATCY 2 cut(s) 15, 70
BstYI RGATCY 2 cut(s) 15, 70
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 4 cut(s) 27, 42, 101, 150
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 188
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 95, 117, 138, 144, 164
CviKI_1 RGCY 5 cut(s) 95, 117, 138, 144, 164
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 17, 72
DpnII GATC 2 cut(s) 15, 70
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 1 cut(s) 116
FaiI YATR 4 cut(s) 114, 271, 275, 277
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 118, 121, 235
FokI GGATG 4 cut(s) 14, 29, 88, 137
Fsp4HI GCNGC 3 cut(s) 118, 121, 235
FspBI CTAG 2 cut(s) 48, 161
FspI TGCGCA 1 cut(s) 187
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 118, 121, 235
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 4, 237, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 15, 70
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 1 cut(s) 152
Lsp1109I GCAGC 2 cut(s) 132, 221
MaeI CTAG 2 cut(s) 48, 161
MalI GATC 2 cut(s) 17, 72
MboI GATC 2 cut(s) 15, 70
MboII GAAGA 3 cut(s) 63, 74, 142
MflI RGATCY 2 cut(s) 15, 70
MluCI AATT 1 cut(s) 244
MnlI CCTC 2 cut(s) 126, 175
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 15, 70
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 137
NsbI TGCGCA 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 36
PkrI GCNGC 3 cut(s) 119, 122, 236
PspN4I GGNNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 183
PsuI RGATCY 2 cut(s) 15, 70
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 118, 121, 235
Sau3AI GATC 2 cut(s) 15, 70
SetI ASST 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 118
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 48, 161
StyI CCWWGG 1 cut(s) 172
TasI AATT 1 cut(s) 244
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 120, 234
TspDTI ATGAA 2 cut(s) 101, 143
TspRI CASTG 1 cut(s) 184
XspI CTAG 2 cut(s) 48, 161
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.