Rroxscaffold_4G00292510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003963
Physical Location & Seq
Forward (+)
12793215 .. 12798989
5775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292510.1

Sequence Viewer

Length: 372 bp
ATGCAATACATCAATTTCCTAGCCGCCATCCAACCTTGTATCGTCCCTAGAAGCTTGCTTGCTTTCAAGGATCTTCGAGTTCTTCGTCTCAAGGTTTTATCATTCATCTTTCAAGAAAGATGTTCATCGGGAATTACAAGTTCAGATCTAATTGCAACTCTTGATAAGCCTCATGCAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAAGCCACCGAAACTGAAGAGGCCATTGAATTATTGTCAGCAGGAAAGAGCTACATTGGTGAGTCAGAGTGCTTCAAATTTTATTCTTCCATTCTACATTATGGAGTTGAAAATGTATGTAATTGCTATGGTGTATCAATGCAGGTGCAGCTAATGAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.74

Weight (kDa)

6.72

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 340
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 5 cut(s) 67, 113, 236, 283, 317
AluBI AGCT 3 cut(s) 54, 258, 358
AluI AGCT 3 cut(s) 54, 258, 358
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 78
AoxI GGCC 2 cut(s) 192, 228
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 3 cut(s) 20, 48, 370
BfuAI ACCTGC 1 cut(s) 340
BglII AGATCT 1 cut(s) 145
BisI GCNGC 2 cut(s) 24, 356
BlsI GCNGC 2 cut(s) 25, 357
BmcAI AGTACT 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 124
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 2 cut(s) 194, 230
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 194, 230
Bsp143I GATC 2 cut(s) 70, 145
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 194, 230
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 70, 145
BssT1I CCWWGG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 56, 60
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 2 cut(s) 73, 148
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 70, 145
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 2 cut(s) 70, 145
BstYI RGATCY 2 cut(s) 70, 145
BsuRI GGCC 2 cut(s) 194, 230
BtsCI GGATG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 56, 60
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 173
CviJI RGCY 8 cut(s) 23, 54, 169, 194, 212, 230, 258, 358
CviKI_1 RGCY 8 cut(s) 23, 54, 169, 194, 212, 230, 258, 358
CviQI GTAC 1 cut(s) 179
DpnI GATC 2 cut(s) 72, 147
DpnII GATC 2 cut(s) 70, 145
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 174, 309, 325, 336
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 24, 356
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 24, 356
FspBI CTAG 3 cut(s) 20, 48, 370
GluI GCNGC 2 cut(s) 24, 356
HaeIII GGCC 2 cut(s) 194, 230
Hin1II CATG 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 145, 274
Hpy188III TCNNGA 3 cut(s) 113, 129, 161
HpyCH4V TGCA 5 cut(s) 4, 155, 176, 349, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 2 cut(s) 70, 145
LpnPI CCDG 2 cut(s) 234, 335
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 3 cut(s) 20, 48, 370
MalI GATC 2 cut(s) 72, 147
MboI GATC 2 cut(s) 70, 145
MboII GAAGA 4 cut(s) 65, 74, 236, 285
MflI RGATCY 2 cut(s) 70, 145
MluCI AATT 6 cut(s) 13, 132, 150, 236, 284, 328
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 180, 184, 220
MwoI GCNNNNNNNGC 1 cut(s) 355
NdeII GATC 2 cut(s) 70, 145
NlaIII CATG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 340
PceI AGGCCT 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PkrI GCNGC 2 cut(s) 25, 357
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsuI RGATCY 2 cut(s) 70, 145
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 2 cut(s) 24, 356
Sau3AI GATC 2 cut(s) 70, 145
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 278
SetI ASST 6 cut(s) 37, 56, 96, 260, 354, 360
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 6 cut(s) 13, 132, 150, 236, 284, 328
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 20, 48, 370
StuI AGGCCT 1 cut(s) 194
StyI CCWWGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 76
TasI AATT 6 cut(s) 13, 132, 150, 236, 284, 328
TatI WGTACW 1 cut(s) 178
TauI GCSGC 1 cut(s) 26
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 94, 114
XapI RAATTY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 3 cut(s) 20, 48, 370
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.