RLG00000008312

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
28778383 .. 28781591
3209 bp
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UTR
Exon/CDS
Intron
RLM00000008312

Sequence Viewer

Length: 345 bp
ATGGGCTCTGCTACTACAGAAAGTGCTTTTCCTCCTCGCATTTCCTCAGGCGCAAAGTTCAATTTCATACTCGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTACAATTAGCAGAAAGCGAATTGGAGCTGAAATTGATCTGATGATCTCTGCAAACCAACCTGTCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCGCACTGTGAGCCATCAGAAGGATGCGACAGAATTCTACAAATGGCGTTGAAGTTTCTGAACAAAGAAGGGAAGAGAACTTCTGGAGGGGCTTAG

Protein Analysis

115

Amino Acids

12.42

Weight (kDa)

6.71

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 61, 220, 301
AluBI AGCT 5 cut(s) 92, 116, 128, 155, 197
AluI AGCT 5 cut(s) 92, 116, 128, 155, 197
ApeKI GCWGC 3 cut(s) 92, 95, 116
ApoI RAATTY 1 cut(s) 282
AspLEI GCGC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 46
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 229, 236
BbvI GCAGC 3 cut(s) 79, 82, 103
BccI CCATC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 93, 96, 117
BlsI GCNGC 3 cut(s) 94, 97, 118
BmsI GCATC 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 229, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 247, 278
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 79, 82, 103
BslI CCNNNNNNNGG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 163, 171
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 59
BssMI GATC 2 cut(s) 163, 171
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 46, 342
BstF5I GGATG 2 cut(s) 247, 278
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 166, 174
BstMBI GATC 2 cut(s) 163, 171
BstMWI GCNNNNNNNGC 2 cut(s) 125, 259
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 79, 82, 103
BstV2I GAAGAC 2 cut(s) 229, 236
Bsu36I CCTNAGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 247, 278
BtsIMutI CAGTG 1 cut(s) 253
CfoI GCGC 1 cut(s) 53
CviJI RGCY 8 cut(s) 6, 92, 116, 128, 155, 197, 262, 341
CviKI_1 RGCY 8 cut(s) 6, 92, 116, 128, 155, 197, 262, 341
DdeI CTNAG 2 cut(s) 46, 342
DpnI GATC 2 cut(s) 165, 173
DpnII GATC 2 cut(s) 163, 171
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 5 cut(s) 68, 200, 207, 209, 211
Fnu4HI GCNGC 3 cut(s) 93, 96, 117
FokI GGATG 2 cut(s) 234, 285
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 93, 96, 117
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 93, 96, 117
HhaI GCGC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 168, 268, 309
Hpy188III TCNNGA 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 263, 311
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 259
HpyF3I CTNAG 2 cut(s) 46, 342
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 163, 171
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 4 cut(s) 33, 112, 201, 318
Lsp1109I GCAGC 3 cut(s) 79, 82, 103
LweI GCATC 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 165, 173
MboI GATC 2 cut(s) 163, 171
MboII GAAGA 3 cut(s) 229, 236, 334
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 61, 132, 147, 159, 282
MnlI CCTC 4 cut(s) 42, 45, 55, 329
MwoI GCNNNNNNNGC 2 cut(s) 125, 259
NdeII GATC 2 cut(s) 163, 171
NmuCI GTSAC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 94, 97, 118
SatI GCNGC 3 cut(s) 93, 96, 117
Sau3AI GATC 2 cut(s) 163, 171
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 94, 118, 130, 157, 190, 199, 206
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 15
SgeI CNNG 7 cut(s) 48, 60, 83, 111, 200, 206, 229
Sse9I AATT 5 cut(s) 61, 132, 147, 159, 282
SsiI CCGC 1 cut(s) 251
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 72
TasI AATT 5 cut(s) 61, 132, 147, 159, 282
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 92, 95, 116
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 55, 90, 120, 236
TspRI CASTG 1 cut(s) 260
XapI RAATTY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.