RchiOBHm_Chr7g0186941

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
6682176 .. 6682814
639 bp
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UTR
Exon/CDS
Intron
PRQ16686

Sequence Viewer

Length: 543 bp
ATGTTTTCTCCATCATTACTCACACTAATTTACTCCATCTTTTCCAATTTCACTCTTCTTTCTCTTCCCTATATAAACACCTTCTCCTCTCACTCTAAAAGATATTCCTTCATCCATTTCATCTCCTTGTCTCACCATTTCCTTTCCATTTTCCCACCAATTCCTTCATCCATTCCATCTTCTTTGTCTCTCCATTTTCTTTCCATTTTCCTATACACATTCCTTCATCCATTCCATCTTCTTTGTCTCTCCATTTCCTTTCCATTTTCCCACACACATTCCTTCATCCATTCCATCTCCTTGTCTCTCCATTTCCTCTCCATATTTCTTTTCCATTCTCTAGTTTTCTTGTTCTTCATTTTCAAGCCAAGAGAAAGAGAAGCCATGCAATACATCAATTTCCCAACCGCCATCCACCCTTGTGTCGTCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCGTCTCAAGGCTTTATCATTCATCTTTCAAGGTGTATTATATCCTTTCTCTTGTTTTCTTTGTTTGATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

21.01

Weight (kDa)

9.59

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 408
AclWI GGATC 1 cut(s) 462
AgsI TTSAA 4 cut(s) 364, 451, 461, 497
AleI CACNNNNGTG 1 cut(s) 420
Alw26I GTCTC 5 cut(s) 135, 192, 251, 309, 476
AlwI GGATC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 125
BccI CCATC 6 cut(s) 19, 44, 184, 243, 302, 419
BcoDI GTCTC 5 cut(s) 135, 192, 251, 309, 476
BfaI CTAG 2 cut(s) 341, 432
BpuEI CTTGAG 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
BseGI GGATG 5 cut(s) 111, 167, 226, 285, 411
BseRI GAGGAG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 413
BsmAI GTCTC 5 cut(s) 135, 192, 251, 309, 476
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 413
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 462
BssMI GATC 1 cut(s) 454
Bst6I CTCTTC 2 cut(s) 60, 69
BstC8I GCNNGC 1 cut(s) 444
BstF5I GGATG 5 cut(s) 111, 167, 226, 285, 411
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 5 cut(s) 135, 192, 251, 309, 476
BstMBI GATC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BtsCI GGATG 5 cut(s) 111, 167, 226, 285, 411
Cac8I GCNNGC 1 cut(s) 444
CviAII CATG 1 cut(s) 385
CviJI RGCY 3 cut(s) 367, 383, 479
CviKI_1 RGCY 3 cut(s) 367, 383, 479
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 60, 69
EarI CTCTTC 2 cut(s) 60, 69
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 1 cut(s) 388
FaiI YATR 6 cut(s) 72, 74, 214, 323, 386, 508
FaqI GGGAC 1 cut(s) 413
FatI CATG 1 cut(s) 384
FokI GGATG 5 cut(s) 98, 154, 213, 272, 398
FspBI CTAG 2 cut(s) 341, 432
Hin1II CATG 1 cut(s) 388
HphI GGTGA 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 91, 118, 174, 233, 292
HpyCH4V TGCA 1 cut(s) 388
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 341, 432
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 8 cut(s) 47, 56, 171, 230, 346, 447, 449, 458
MflI RGATCY 1 cut(s) 454
MluCI AATT 4 cut(s) 27, 46, 159, 397
MnlI CCTC 2 cut(s) 97, 326
MslI CAYNNNNRTG 1 cut(s) 420
NdeII GATC 1 cut(s) 454
NlaIII CATG 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 420
PsuI RGATCY 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 420
Sau3AI GATC 1 cut(s) 454
SetI ASST 2 cut(s) 83, 502
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 4 cut(s) 27, 46, 159, 397
SsiI CCGC 1 cut(s) 408
SspMI CTAG 2 cut(s) 341, 432
TasI AATT 4 cut(s) 27, 46, 159, 397
TspDTI ATGAA 7 cut(s) 100, 109, 156, 215, 274, 346, 478
XspI CTAG 2 cut(s) 341, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.