Rmu_sc0003541.1_g000003

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003541.1
Physical Location & Seq
Forward (+)
31149 .. 33598
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003541.1_g000003.1.cds

Sequence Viewer

Length: 375 bp
atgcaatacatcaagatcctagcctccatccacccttgtgtcgtccctagaagattgtttgctttcaaggatcttcaagttcttcgtctcaaggctttagggtttaggattttgagagttgaagatctaaaatgtgggaaaattgctactcctttaccaccaaaggatacatttatggaggatccgctacgagttcttcgagctatccgttttggtgcaaggttcggattcatactcgatgaacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagcgaattggagctgaagtaagttcctgtctagcatacctttcactgatagttgttcagacatattag

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

9.51

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AclWI GGATC 4 cut(s) 10, 78, 176, 189
AcuI CTGAAG 1 cut(s) 342
AgsI TTSAA 3 cut(s) 67, 77, 122
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 5 cut(s) 203, 257, 281, 293, 320
AluI AGCT 5 cut(s) 203, 257, 281, 293, 320
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 4 cut(s) 10, 78, 176, 189
ApeKI GCWGC 3 cut(s) 257, 260, 281
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 244, 247, 268
BccI CCATC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 3 cut(s) 20, 48, 338
BfuI GTATCC 1 cut(s) 160
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 258, 261, 282
BlsI GCNGC 3 cut(s) 259, 262, 283
BmiI GGNNCC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
BseGI GGATG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 244, 247, 268
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 15, 70, 124, 181
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 4 cut(s) 10, 78, 176, 189
BssMI GATC 4 cut(s) 15, 70, 124, 181
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 4 cut(s) 18, 73, 127, 184
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 4 cut(s) 15, 70, 124, 181
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 244, 247, 268
BstX2I RGATCY 4 cut(s) 15, 70, 124, 181
BstYI RGATCY 4 cut(s) 15, 70, 124, 181
BsuI GTATCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 350
CviJI RGCY 7 cut(s) 23, 95, 203, 257, 281, 293, 320
CviKI_1 RGCY 7 cut(s) 23, 95, 203, 257, 281, 293, 320
DpnI GATC 4 cut(s) 17, 72, 126, 183
DpnII GATC 4 cut(s) 15, 70, 124, 181
Eco57I CTGAAG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 4 cut(s) 176, 233, 343, 370
FaqI GGGAC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 258, 261, 282
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 258, 261, 282
FspBI CTAG 3 cut(s) 20, 48, 338
GluI GCNGC 3 cut(s) 258, 261, 282
HinfI GANTC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 227, 366
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 4, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 15, 70, 124, 181
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 2 cut(s) 277, 346
Lsp1109I GCAGC 3 cut(s) 244, 247, 268
MaeI CTAG 3 cut(s) 20, 48, 338
MalI GATC 4 cut(s) 17, 72, 126, 183
MboI GATC 4 cut(s) 15, 70, 124, 181
MboII GAAGA 5 cut(s) 63, 65, 74, 134, 188
MflI RGATCY 4 cut(s) 15, 70, 124, 181
MluCI AATT 3 cut(s) 141, 297, 312
MnlI CCTC 2 cut(s) 34, 172
MslI CAYNNNNRTG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 4 cut(s) 15, 70, 124, 181
NlaIV GGNNCC 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 36
PcsI WCGNNNNNNNCGW 2 cut(s) 196, 205
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 259, 262, 283
PspN4I GGNNCC 1 cut(s) 183
PsuI RGATCY 4 cut(s) 15, 70, 124, 181
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 3 cut(s) 258, 261, 282
Sau3AI GATC 4 cut(s) 15, 70, 124, 181
SetI ASST 7 cut(s) 205, 224, 259, 283, 295, 322, 348
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 141, 297, 312
SsiI CCGC 1 cut(s) 185
SspMI CTAG 3 cut(s) 20, 48, 338
TaqI TCGA 2 cut(s) 199, 237
TasI AATT 3 cut(s) 141, 297, 312
TfiI GAWTC 1 cut(s) 228
TscAI CASTG 1 cut(s) 357
TseI GCWGC 3 cut(s) 257, 260, 281
TspDTI ATGAA 3 cut(s) 220, 255, 285
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 357
XspI CTAG 3 cut(s) 20, 48, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.