Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003963

Physical Location & Seq

Genomic Coordinates Reverse (-)

85495993 .. 85497122

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG553800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGATGAACAAGCGGAAGAAGTTTTCGATTCTTTCCAAGATACAGTTCAGAGAGAGGCACCTACTTTTACCGGATCATCATTCCAGAACTTTGTTGACTCTTGGTGACAGAGAAAGCAGAGATCGAAAGATCAACAAAATTGTCCATAGCCTACTATTTGAAGAAGAAACAGCACAAAGAGATGTTCAATGGTCCTGGAAGGTTCTCTGGGTTGGTATAGATCGGGATCTGCAGTCGATCGTGGTGGTGTCCGGTGTAGGGCTCGGCGGTTTTCTGGGCATAGCACCGCGGCGGAGACTTCCTGAGCGGGAGAACGGTGGCAGTGACGCTTCCAGAGCGGGAGTCAATCGGCTAGATAGGTCGGGGTACCGGATTCCAGCGGGTATTGCAGGGGATCATATCCTCTCCGACTGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.98

Weight (kDa)

10.37

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364461 RchiOBHm_Chr1g0367941 RchiOBHm_Chr2g0121191 RchiOBHm_Chr2g0122271 RchiOBHm_Chr2g0125931 RchiOBHm_Chr2g0136661 RchiOBHm_Chr2g0146691 RchiOBHm_Chr2g0155551 RchiOBHm_Chr3g0448751 RchiOBHm_Chr3g0470561 RchiOBHm_Chr4g0399811 RchiOBHm_Chr4g0411721 RchiOBHm_Chr4g0411851 RchiOBHm_Chr4g0412001 RchiOBHm_Chr7g0186941 RchiOBHm_Chr7g0188841
rosa_laevigata	RLG00000008312
rosa_multiflora	Rmu_sc0003541.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009330 Rroxscaffold_2G00119730 Rroxscaffold_4G00292510 Rroxscaffold_4G00304910 Rroxscaffold_4G00307600 Rroxscaffold_4G00319210 Rroxscaffold_4G00320210 Rroxscaffold_4G00322660 Rroxscaffold_5G00351300 Rroxscaffold_5G00351690 Rroxscaffold_6G00390060 Rroxscaffold_7G00188640 Rroxscaffold_7G00192410
rosa_samantha	Rh4BG169300 Rh5DG553800
rosa_wichuraiana	Rw1G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	2 cut(s)	60, 369
AccBSI	CCGCTC	2 cut(s)	310, 341
AccII	CGCG	1 cut(s)	292
AciI	CCGC	8 cut(s)	16, 270, 290, 292, 295, 310, 341, 383
AclWI	GGATC	3 cut(s)	84, 237, 405
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	164, 191
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	3 cut(s)	84, 237, 405
Asp718I	GGTACC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	16, 119
AvaII	GGWCC	1 cut(s)	195
BanI	GGYRCC	2 cut(s)	60, 369
BanII	GRGCYC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	62, 371
BmrFI	CCNGG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	3 cut(s)	73, 254, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	290
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	243
BshNI	GGYRCC	2 cut(s)	60, 369
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	74, 255, 373
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
BspACI	CCGC	8 cut(s)	16, 270, 290, 292, 295, 310, 341, 383
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	62, 371
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	3 cut(s)	84, 237, 405
BspT107I	GGYRCC	2 cut(s)	60, 369
BsrBI	CCGCTC	2 cut(s)	310, 341
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	48, 320
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	7 cut(s)	79, 127, 135, 226, 232, 243, 400
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 389
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	195
Cfr42I	CCGCGG	1 cut(s)	293
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	370
CviJI	RGCY	3 cut(s)	153, 265, 355
CviKI_1	RGCY	3 cut(s)	153, 265, 355
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	7 cut(s)	78, 126, 134, 225, 231, 242, 399
DpnII	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
EciI	GGCGGA	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	267
FaiI	YATR	4 cut(s)	150, 221, 284, 402
FauI	CCCGC	3 cut(s)	303, 334, 376
Fnu4HI	GCNGC	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	293
HapII	CCGG	3 cut(s)	74, 255, 373
HgaI	GACGC	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	31, 100, 345, 376
HpaII	CCGG	3 cut(s)	74, 255, 373
HphI	GGTGA	2 cut(s)	16, 119
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	53, 412, 422
Hpy188III	TCNNGA	4 cut(s)	87, 227, 305, 336
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	48, 320
HpyCH4V	TGCA	2 cut(s)	235, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 389
HpyF3I	CTNAG	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	293
Kzo9I	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	107, 326
MalI	GATC	7 cut(s)	78, 126, 134, 225, 231, 242, 399
MbiI	CCGCTC	2 cut(s)	310, 341
MboI	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
MboII	GAAGA	3 cut(s)	31, 176, 179
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	94, 354
MnlI	CCTC	2 cut(s)	51, 416
MspA1I	CMGCKG	2 cut(s)	292, 383
MspI	CCGG	3 cut(s)	74, 255, 373
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	338, 389
NdeII	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
NlaIV	GGNNCC	2 cut(s)	62, 371
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	107, 326
PfeI	GAWTC	2 cut(s)	31, 376
PflFI	GACNNNGTC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	294
Ple19I	CGATCG	1 cut(s)	243
PleI	GAGTC	2 cut(s)	94, 353
PpsI	GAGTC	2 cut(s)	94, 353
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	62, 371
PspPI	GGNCC	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	416
PvuI	CGATCG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacII	CCGCGG	1 cut(s)	293
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	7 cut(s)	76, 124, 132, 223, 229, 240, 397
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	2 cut(s)	94, 354
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	3 cut(s)	66, 207, 365
SfcI	CTRYAG	1 cut(s)	233
Sfr303I	CCGCGG	1 cut(s)	293
SgrBI	CCGCGG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	8 cut(s)	16, 270, 290, 292, 295, 310, 341, 383
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	48, 320
TaqI	TCGA	3 cut(s)	29, 127, 239
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	31, 376
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	107, 326
Tsp45I	GTSAC	2 cut(s)	107, 326
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	331
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	195
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.