RchiOBHm_Chr4g0411851

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
35673726 .. 35675796
2071 bp
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UTR
Exon/CDS
Intron
PRQ38261

Sequence Viewer

Length: 207 bp
ATGGAGGATCCGCTACGCGCGAGTTCTTCAAGCTATCCGTTTTGGTTCAGATTCATACTCGATGAACAACTAAAGGAAGCTTCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCAAATTGGAGCTGAGATTGATCTGATGATCTCTGGAAACCAACCTGTACGTCCAAGCTATGACCTATATATGTGA

Protein Analysis

68

Amino Acids

7.72

Weight (kDa)

4.54

Isoelectric Point (pI)

66.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 20
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 2, 15
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 6 cut(s) 33, 80, 104, 116, 143, 189
AluI AGCT 6 cut(s) 33, 80, 104, 116, 143, 189
AlwI GGATC 2 cut(s) 2, 15
ApeKI GCWGC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 9
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 18, 20
Bsp143I GATC 3 cut(s) 7, 151, 159
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 2 cut(s) 18, 20
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 2, 15
BssMI GATC 3 cut(s) 7, 151, 159
BstDEI CTNAG 1 cut(s) 144
BstFNI CGCG 2 cut(s) 18, 20
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 10, 154, 162
BstMBI GATC 3 cut(s) 7, 151, 159
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstUI CGCG 2 cut(s) 18, 20
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 179
CviJI RGCY 6 cut(s) 33, 80, 104, 116, 143, 189
CviKI_1 RGCY 6 cut(s) 33, 80, 104, 116, 143, 189
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 9, 153, 161
DpnII GATC 3 cut(s) 7, 151, 159
FaiI YATR 5 cut(s) 56, 192, 199, 201, 203
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 50, 156
Hpy188III TCNNGA 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 181
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 3 cut(s) 7, 151, 159
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 3 cut(s) 100, 150, 189
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 181
MalI GATC 3 cut(s) 9, 153, 161
MboI GATC 3 cut(s) 7, 151, 159
MboII GAAGA 1 cut(s) 18
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 120, 135
MvnI CGCG 2 cut(s) 18, 20
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 7, 151, 159
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 7, 151, 159
SetI ASST 9 cut(s) 35, 82, 106, 118, 145, 178, 184, 191, 198
SgeI CNNG 9 cut(s) 29, 31, 33, 42, 71, 99, 177, 188, 198
Sse9I AATT 2 cut(s) 120, 135
SsiI CCGC 1 cut(s) 11
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 120, 135
TfiI GAWTC 1 cut(s) 51
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 43, 78, 108
TspGWI ACGGA 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.