Rroxscaffold_6G00390060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003963
Physical Location & Seq
Reverse (-)
4458540 .. 4463227
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390060.1

Sequence Viewer

Length: 282 bp
ATGCAATACATCAAGATCCTAGCCACCATCCACCCTTGTGTCGTCCCTAGAAGATTGCTTGCTTTCAAGGATCTTCAAGTTCTTCGTCTCAAGGCTTCATCATACATCCTTCAAGGTTGTGCAGTTGTTCAAGCGAATAAAGCAAAGTACGTATCCGGATGTGTGTTGTTCTTCCAACTTTATTATTATAATGTCATCGGATATGGAAGAGCACTTGTTGATTGTGAAAAGCCTACAATTGCAGCTTGGGAAGAGGAGCAATCATCAAAACTAATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

93

Amino Acids

10.59

Weight (kDa)

9.28

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 155
AclWI GGATC 2 cut(s) 10, 78
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 4 cut(s) 67, 77, 113, 131
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 10, 78
Aor13HI TCCGGA 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 20, 48
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 155
BseAI TCCGGA 1 cut(s) 155
BseGI GGATG 3 cut(s) 27, 105, 164
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 214
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 15, 70
BspEI TCCGGA 1 cut(s) 155
BspPI GGATC 2 cut(s) 10, 78
BspQI GCTCTTC 1 cut(s) 202
BssMI GATC 2 cut(s) 15, 70
Bst6I CTCTTC 2 cut(s) 202, 246
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 3 cut(s) 27, 105, 164
BstKTI GATC 2 cut(s) 18, 73
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 15, 70
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSNI TACGTA 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 15, 70
BstYI RGATCY 2 cut(s) 15, 70
BsuI GTATCC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 27, 105, 164
Cac8I GCNNGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 4 cut(s) 23, 95, 232, 245
CviKI_1 RGCY 4 cut(s) 23, 95, 232, 245
CviQI GTAC 1 cut(s) 148
DpnI GATC 2 cut(s) 17, 72
DpnII GATC 2 cut(s) 15, 70
Eam1104I CTCTTC 2 cut(s) 202, 246
EarI CTCTTC 2 cut(s) 202, 246
Eco105I TACGTA 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 3 cut(s) 103, 189, 204
FaqI GGGAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 3 cut(s) 14, 92, 171
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 20, 48
GluI GCNGC 1 cut(s) 243
HapII CCGG 1 cut(s) 156
HpaII CCGG 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 2 cut(s) 13, 156
HpyAV CCTTC 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 4, 122, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 2 cut(s) 15, 70
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 254
MaeI CTAG 2 cut(s) 20, 48
MaeII ACGT 1 cut(s) 150
MalI GATC 2 cut(s) 17, 72
MboI GATC 2 cut(s) 15, 70
MboII GAAGA 6 cut(s) 63, 65, 74, 163, 219, 263
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 15, 70
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 2 cut(s) 237, 273
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 247
MroI TCCGGA 1 cut(s) 155
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 2 cut(s) 15, 70
OliI CACNNNNGTG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 151
PsiI TTATAA 1 cut(s) 189
PsuI RGATCY 2 cut(s) 15, 70
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 15, 70
SduI GDGCHC 1 cut(s) 214
SetI ASST 3 cut(s) 118, 153, 247
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SnaBI TACGTA 1 cut(s) 151
Sse9I AATT 2 cut(s) 237, 273
SspMI CTAG 2 cut(s) 20, 48
TaiI ACGT 1 cut(s) 153
TasI AATT 2 cut(s) 237, 273
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 87
XspI CTAG 2 cut(s) 20, 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.