RchiOBHm_Chr2g0157031

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002877
Physical Location & Seq
Forward (+)
73504748 .. 73505770
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGAGCCCAAGTGTGAGTTGGGAGCAATGACAAGTTCTCATGTTCTAGGAACTTCTAGTGAGAGTATCATCATCGACAGATTTAGTGATCTCCCAGATGAAATTGCTCATCACATTCTTTCCTTCCACTGTGGCATCTTAATGAACCTCATCCGAGAGGGCGCAGTGTCCAAGAGATGCAGACAACTTTATCTATCACTTCCGTCTTTGATTATTGTTTCAGGTCATGTTTCAAACTGCACCAGGTCGAGGGTAAGGTTGATGAATTATTGGGACAGGTACTTGTTTCATCGTGGTGATAATAAGATAGAGTGCTTTGGCATTTGCTGGTCTTTCGATGCCGCAGTCAATGCAGAGATAAGTGATGAGTTTTTTCGAATCACCACGTGGATCCAAAATGCAGTAAGGTGTAATGTTAAAGTGCTTCACCTTGAATTCACTCAAAACAACTTGAATATAGTTGTGTTACCATCTTGCATCTTTCATTGTCATTCTTTGACGGAACTCTATGTGAACTTGAGTGGGGGTGATATTCAATCACCCTCCTTGTCTTTTTCAAGTAATCTCCAGCACTTGGAGTTGAAGGATGCTATGCTTGAAGATGACCAGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTTAGTGGAATAAAAGATATCACGATTGAGAGCTCGTCTTTGGAAATTTTTATTTATCTGTTTCCTTTTAACAATTATGAGCTCTGGGATCTTAACATTTCAGGGGAGAAACTTGAAGAAATAATAATACTTTGGCATTTTGATTCGAATGATGATTCAAGACGTGGTCTTATACCTCGCATCAGGTCGCTAAATATTCCCGCCCCAAAGCTTAAAAAGATCACGTGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTGATGTGCTTAGAAGAAGCTAAGATTTTTCTGGTCCCCGACTTAGATGACTTCAATAACCCATTTGAGGTTCTCTGCAGTATTCGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

340

Amino Acids

39.07

Weight (kDa)

5.36

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 128 - 274 2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 574
AciI CCGC 2 cut(s) 342, 867
AclWI GGATC 4 cut(s) 385, 398, 762, 918
AcsI RAATTY 2 cut(s) 434, 711
AcvI CACGTG 2 cut(s) 387, 891
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 249, 574, 997
AjiI CACGTC 1 cut(s) 830
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 4 cut(s) 699, 748, 877, 950
AluI AGCT 4 cut(s) 699, 748, 877, 950
Alw21I GWGCWC 2 cut(s) 701, 750
AlwI GGATC 4 cut(s) 385, 398, 762, 918
ApoI RAATTY 2 cut(s) 434, 711
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 964
AsuHPI GGTGA 5 cut(s) 308, 373, 419, 531, 539
AsuII TTCGAA 3 cut(s) 376, 615, 812
AvaII GGWCC 1 cut(s) 964
BamHI GGATCC 1 cut(s) 390
BanII GRGCYC 3 cut(s) 9, 701, 750
BbrPI CACGTG 2 cut(s) 387, 891
Bbv12I GWGCWC 2 cut(s) 701, 750
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 244
BfaI CTAG 2 cut(s) 47, 57
BfmI CTRYAG 1 cut(s) 1006
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 964
BmgBI CACGTC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 3 cut(s) 6, 392, 966
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 8 cut(s) 144, 167, 328, 486, 577, 651, 855, 928
BpmI CTGGAG 1 cut(s) 551
Bpu14I TTCGAA 3 cut(s) 376, 615, 812
BpuEI CTTGAG 1 cut(s) 538
BsaAI YACGTR 2 cut(s) 387, 891
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 574, 997
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 150, 592
BseLI CCNNNNNNNGG 3 cut(s) 249, 574, 997
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 607
BsgI GTGCAG 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 701, 750
BslFI GGGAC 2 cut(s) 287, 950
BslI CCNNNNNNNGG 3 cut(s) 249, 574, 997
BsmFI GGGAC 2 cut(s) 287, 950
Bsp119I TTCGAA 3 cut(s) 376, 615, 812
Bsp1286I GDGCHC 3 cut(s) 9, 701, 750
Bsp143I GATC 5 cut(s) 88, 390, 754, 885, 910
BspACI CCGC 2 cut(s) 342, 867
BspLI GGNNCC 3 cut(s) 6, 392, 966
BspMAI CTGCAG 1 cut(s) 1010
BspPI GGATC 4 cut(s) 385, 398, 762, 918
BspT104I TTCGAA 3 cut(s) 376, 615, 812
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 607
BssMI GATC 5 cut(s) 88, 390, 754, 885, 910
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 2 cut(s) 387, 891
BstBI TTCGAA 3 cut(s) 376, 615, 812
BstDEI CTNAG 3 cut(s) 940, 951, 973
BstF5I GGATG 2 cut(s) 150, 592
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 5 cut(s) 91, 393, 757, 888, 913
BstMBI GATC 5 cut(s) 88, 390, 754, 885, 910
BstMWI GCNNNNNNNGC 2 cut(s) 350, 1014
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 1006
BstX2I RGATCY 2 cut(s) 390, 754
BstYI RGATCY 2 cut(s) 390, 754
BtrI CACGTC 1 cut(s) 830
BtsCI GGATG 2 cut(s) 150, 592
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 127, 171
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 964
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 41, 227
CviJI RGCY 5 cut(s) 7, 699, 748, 877, 950
CviKI_1 RGCY 5 cut(s) 7, 699, 748, 877, 950
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 3 cut(s) 940, 951, 973
DpnI GATC 5 cut(s) 90, 392, 756, 887, 912
DpnII GATC 5 cut(s) 88, 390, 754, 885, 910
DraIII CACNNNGTG 1 cut(s) 387
Ecl136II GAGCTC 2 cut(s) 699, 748
Eco24I GRGCYC 3 cut(s) 9, 701, 750
Eco32I GATATC 2 cut(s) 624, 685
Eco47I GGWCC 1 cut(s) 964
Eco53kI GAGCTC 2 cut(s) 699, 748
Eco72I CACGTG 2 cut(s) 387, 891
EcoICRI GAGCTC 2 cut(s) 699, 748
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 2 cut(s) 624, 685
EcoT22I ATGCAT 1 cut(s) 644
EcoT38I GRGCYC 3 cut(s) 9, 701, 750
FaeI CATG 2 cut(s) 44, 230
FaiI YATR 7 cut(s) 42, 228, 458, 510, 593, 744, 839
FaqI GGGAC 2 cut(s) 287, 950
FatI CATG 2 cut(s) 40, 226
FauI CCCGC 1 cut(s) 874
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 2 cut(s) 137, 599
FriOI GRGCYC 3 cut(s) 9, 701, 750
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 2 cut(s) 47, 57
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 551
HhaI GCGC 1 cut(s) 164
Hin1II CATG 2 cut(s) 44, 230
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 3 cut(s) 378, 809, 821
HphI GGTGA 5 cut(s) 308, 373, 419, 531, 539
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 4 cut(s) 659, 688, 825, 908
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 133, 577
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 4 cut(s) 386, 655, 829, 890
HpyCH4V TGCA 8 cut(s) 180, 240, 353, 401, 477, 636, 642, 1008
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 1014
HpyF3I CTNAG 3 cut(s) 940, 951, 973
HpySE526I ACGT 4 cut(s) 386, 655, 829, 890
Hsp92II CATG 2 cut(s) 44, 230
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 5 cut(s) 88, 390, 754, 885, 910
LmnI GCTCC 2 cut(s) 4, 23
LweI GCATC 8 cut(s) 144, 167, 328, 486, 577, 651, 855, 928
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 2 cut(s) 47, 57
MaeII ACGT 4 cut(s) 386, 655, 829, 890
MaeIII GTNAC 1 cut(s) 465
MalI GATC 5 cut(s) 90, 392, 756, 887, 912
MboI GATC 5 cut(s) 88, 390, 754, 885, 910
MboII GAAGA 4 cut(s) 611, 621, 794, 956
MflI RGATCY 2 cut(s) 390, 754
MhlI GDGCHC 3 cut(s) 9, 701, 750
MluCI AATT 6 cut(s) 102, 265, 434, 650, 711, 739
MnlI CCTC 6 cut(s) 151, 158, 243, 553, 852, 991
Mph1103I ATGCAT 1 cut(s) 644
MseI TTAA 6 cut(s) 140, 417, 735, 759, 879, 1021
MslI CAYNNNNRTG 2 cut(s) 140, 294
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 350, 1014
NdeII GATC 5 cut(s) 88, 390, 754, 885, 910
NlaIII CATG 2 cut(s) 44, 230
NlaIV GGNNCC 3 cut(s) 6, 392, 966
NsiI ATGCAT 1 cut(s) 644
NspV TTCGAA 3 cut(s) 376, 615, 812
PfeI GAWTC 3 cut(s) 378, 809, 821
PflFI GACNNNGTC 1 cut(s) 831
PflMI CCANNNNNTGG 1 cut(s) 574
PkrI GCNGC 1 cut(s) 343
PmaCI CACGTG 2 cut(s) 387, 891
PmlI CACGTG 2 cut(s) 387, 891
Ppu21I YACGTR 2 cut(s) 387, 891
Psp124BI GAGCTC 2 cut(s) 701, 750
Psp6I CCWGG 1 cut(s) 242
PspCI CACGTG 2 cut(s) 387, 891
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 6, 392, 966
PspPI GGNCC 1 cut(s) 964
PstI CTGCAG 1 cut(s) 1010
PsuI RGATCY 2 cut(s) 390, 754
PsyI GACNNNGTC 1 cut(s) 831
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 140, 294
SacI GAGCTC 2 cut(s) 701, 750
SaqAI TTAA 6 cut(s) 140, 417, 735, 759, 879, 1021
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 5 cut(s) 88, 390, 754, 885, 910
Sau96I GGNCC 1 cut(s) 964
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 3 cut(s) 9, 701, 750
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 8 cut(s) 144, 167, 328, 486, 577, 651, 855, 928
SfcI CTRYAG 1 cut(s) 1006
SfuI TTCGAA 3 cut(s) 376, 615, 812
SinI GGWCC 1 cut(s) 964
SmiMI CAYNNNNRTG 2 cut(s) 140, 294
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 6 cut(s) 102, 265, 434, 650, 711, 739
SsiI CCGC 2 cut(s) 342, 867
SspI AATATT 1 cut(s) 862
SspMI CTAG 2 cut(s) 47, 57
SstI GAGCTC 2 cut(s) 701, 750
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 4 cut(s) 389, 658, 832, 893
TaqI TCGA 6 cut(s) 75, 248, 336, 376, 615, 812
TasI AATT 6 cut(s) 102, 265, 434, 650, 711, 739
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 3 cut(s) 378, 809, 821
Tru1I TTAA 6 cut(s) 140, 417, 735, 759, 879, 1021
Tru9I TTAA 6 cut(s) 140, 417, 735, 759, 879, 1021
TscAI CASTG 2 cut(s) 134, 171
TspDTI ATGAA 5 cut(s) 114, 158, 278, 278, 473
TspGWI ACGGA 2 cut(s) 192, 515
TspRI CASTG 2 cut(s) 134, 171
Tth111I GACNNNGTC 1 cut(s) 831
Van91I CCANNNNNTGG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 964
XapI RAATTY 2 cut(s) 434, 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 2 cut(s) 47, 57
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.