Rroxscaffold_3G00231060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002877
Physical Location & Seq
Forward (+)
15987376 .. 15988629
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231060.1

Sequence Viewer

Length: 378 bp
ATGACTGTAGCACGGAACAATATGTGGAAGACAAGCTTCCTTCAAGGTTCTTGTTATACTAAAATTATGTGCCCTACTGAGATTTGGTCTTTGCTTATGCATAGTCTTGAGTTTGAGCAACTGAACTTCCTCCTCCTTGCTGGCAGAGATCATGGTGCAATGCCCCCTTACCTGATCTCAATATCTCATCTACGTATGCAATTTTTGTTTCATGTAGATCTCATTTCTCGTTTCACAATCCCTAAGGTGATGATCGATATGGAACACATGGGAACTACTACAAGCTGCCAAACTCATGGAGCTTGTAAGGAGCTTATAGACAGATTCAGTGATCTTCCGGATGAAATTGCTCATCACATTCTTTCCTTCCTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.45

Weight (kDa)

6.2

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 337
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 4 cut(s) 36, 285, 302, 313
AluI AGCT 4 cut(s) 36, 285, 302, 313
Aor13HI TCCGGA 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 337
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 337
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 5 cut(s) 148, 174, 217, 252, 331
BspCNI CTCAG 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 165
BssMI GATC 5 cut(s) 148, 174, 217, 252, 331
Bst4CI ACNGT 1 cut(s) 7
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 78, 243
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 5 cut(s) 151, 177, 220, 255, 334
BstMBI GATC 5 cut(s) 148, 174, 217, 252, 331
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 74
BstSNI TACGTA 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 255
CviAII CATG 4 cut(s) 152, 212, 268, 296
CviJI RGCY 4 cut(s) 36, 285, 302, 313
CviKI_1 RGCY 4 cut(s) 36, 285, 302, 313
DdeI CTNAG 2 cut(s) 78, 243
DpnI GATC 5 cut(s) 150, 176, 219, 254, 333
DpnII GATC 5 cut(s) 148, 174, 217, 252, 331
Eco105I TACGTA 1 cut(s) 194
Eco81I CCTNAGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 102
FaeI CATG 4 cut(s) 155, 215, 271, 299
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 4 cut(s) 151, 211, 267, 295
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
HapII CCGG 1 cut(s) 338
Hin1II CATG 4 cut(s) 155, 215, 271, 299
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 324
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 107, 338, 370
HpyAV CCTTC 2 cut(s) 50, 376
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 100, 158, 199
HpyF3I CTNAG 2 cut(s) 78, 243
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 4 cut(s) 155, 215, 271, 299
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 5 cut(s) 148, 174, 217, 252, 331
LmnI GCTCC 2 cut(s) 299, 310
LpnPI CCDG 3 cut(s) 126, 185, 351
Lsp1109I GCAGC 1 cut(s) 272
MaeII ACGT 1 cut(s) 193
MalI GATC 5 cut(s) 150, 176, 219, 254, 333
MboI GATC 5 cut(s) 148, 174, 217, 252, 331
MboII GAAGA 2 cut(s) 40, 326
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 63, 200, 345
MnlI CCTC 2 cut(s) 140, 143
Mph1103I ATGCAT 1 cut(s) 102
MroI TCCGGA 1 cut(s) 337
MseI TTAA 1 cut(s) 376
MspI CCGG 1 cut(s) 338
NdeII GATC 5 cut(s) 148, 174, 217, 252, 331
NlaIII CATG 4 cut(s) 155, 215, 271, 299
NsiI ATGCAT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 194
PsuI RGATCY 1 cut(s) 217
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 5 cut(s) 148, 174, 217, 252, 331
SduI GDGCHC 1 cut(s) 74
SetI ASST 8 cut(s) 38, 49, 174, 196, 249, 287, 304, 315
SfcI CTRYAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SnaBI TACGTA 1 cut(s) 194
Sse9I AATT 3 cut(s) 63, 200, 345
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 63, 200, 345
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 1 cut(s) 334
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 200, 357
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.